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Original Article

DNA methylation changes in human lung epithelia cells exposed to multi-walled carbon nanotubes

, , ORCID Icon, , , , , , , , , , , & show all
Pages 857-870 | Received 31 Mar 2017, Accepted 21 Aug 2017, Published online: 13 Sep 2017

References

  • Bork, S., S. Pfister, H. Witt, P. Horn, B. Korn, A. D. Ho, and W. Wagner. 2010. “DNA Methylation Pattern Changes upon Long-term Culture and Aging of Human Mesenchymal Stromal Cells.” Aging Cell 9: 54–63.
  • Borm, P. J., D. Robbins, S. Haubold, T. Kuhlbusch, H. Fissan, K. Donaldson, R. Schins, et al. 2006. “The Potential Risks of Nanomaterials: A Review Carried out for ECETOC.” Particle and Fibre Toxicology 3: 11.
  • Brown, T. A., J. W. Lee, A. Holian, V. Porter, H. Fredriksen, M. Kim, and Y. H. Cho. 2016. “Alterations in DNA Methylation Corresponding with Lung Inflammation and as a Biomarker for Disease Development after MWCNT Exposure.” Nanotoxicology 10: 453–461.
  • Chatterjee, N., J. Yang, S. Kim, and J. Choi. 2016. “Diameter Size and Aspect Ratio as a Critical Determinants of Uptake, Stress Response, Global Metabolomics and Epigenetic Alterations in Multi-wall Carbon Nanotubes.” Carbon 108: 529–540.
  • Chatterjee, N., J. Yang, D. Yoon, S. Kim, S.-W. Joo, and J. Choi. 2017. “Differential Crosstalk between Global DNA Methylation and Metabolomics Associated with Cell Type Specific Stress Response by Pristine and Functionalized MWCNT.” Biomaterials 115: 167–180.
  • Chen, Z. X., and A. D. Riggs. 2011. “DNA Methylation and Demethylation in Mammals.” The Journal of Biological Chemistry 286: 18347–18353.
  • De Volder, M. F., S. H. Tawfick, R. H. Baughman, and A. J. Hart. 2013. “Carbon Nanotubes: Present and Future Commercial Applications.” Science 339: 535–539.
  • Dedeurwaerder, S., M. Defrance, E. Calonne, H. Denis, C. Sotiriou, and F. Fuks. 2011. “Evaluation of the Infinium Methylation 450K Technology.” Epigenomics 3: 771–784.
  • Deng, X., J. B. Berletch, D. K. Nguyen, and C. M. Disteche. 2014. “X Chromosome Regulation: Diverse Patterns in Development, Tissues and Disease.” Nature Reviews Genetics 15: 367–378.
  • Du, P., X. Zhang, C. C. Huang, N. Jafari, W. A. Kibbe, L. Hou, and S. M. Lin. 2010. “Comparison of Beta-value and M-value Methods for Quantifying Methylation Levels by Microarray Analysis.” BMC Bioinformatics 11: 587.
  • Ernst, J., and M. Kellis. 2011. “Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome.”Nat Biotechnol 28: 817–825.
  • Ernst, J., P. Kheradpour, T. S. Mikkelsen, N. Shoresh, L. D. Ward, C. B. Epstein, X. Zhang, et al. 2011. “Mapping and Analysis of Chromatin State Dynamics in Nine Human Cell Types.” Nature 473: 43–49.
  • Fard, J. K., S. Jafari, and M. A. Eghbal. 2015. “A Review of Molecular Mechanisms Involved in Toxicity of Nanoparticles.” Advanced Pharmaceutical Bulletin 5: 447–454.
  • Feil, R., and M. F. Fraga. 2012. “Epigenetics and the Environment: Emerging Patterns and Implications.” Nature Reviews. Genetics 13: 97–109.
  • Fernandez, A. F., G. F. Bayon, R. G. Urdinguio, E. G. Torano, M. G. Garcia, A. Carella, S. Petrus-Reurer, et al. 2015. “H3K4me1 Marks DNA Regions Hypomethylated During Aging in Human Stem and Differentiated Cells.” Genome Research 25: 27–40.
  • Gurr, J. R., A. S. Wang, C. H. Chen, and K. Y. Jan. 2005. “Ultrafine Titanium dioxide Particles in the Absence of Photoactivation Can Induce Oxidative Damage to Human Bronchial Epithelial Cells.” Toxicology 213: 66–73.
  • Halappanavar, S., P. Jackson, A. Williams, K. A. Jensen, K. S. Hougaard, U. Vogel, C. L. Yauk, and H. Wallin. 2011. “Pulmonary Response to Surface-coated Nanotitanium dioxide Particles Includes Induction of Acute Phase Response Genes, Inflammatory Cascades, and Changes in microRNAs: A Toxicogenomic Study.” Environmental and Molecular Mutagenesis 52: 425–439.
  • Heinrich, U., R. Fuhst, S. Rittinghausen, O. Creutzenberg, B. Bellmann, W. Koch, and K. Levsen. 1995. “Chronic Inhalation Exposure of Wistar Rats and Two Different Strains of Mice to Diesel Engine Exhaust, Carbon Black, and Titanium dioxide.” Inhalation Toxicology 7: 533–556.
  • Hon, G. C., R. D. Hawkins, O. L. Caballero, C. Lo, R. Lister, M. Pelizzola, A. Valsesia, et al. 2012. “Global DNA Hypomethylation Coupled to Repressive Chromatin Domain Formation and Gene Silencing in Breast Cancer.” Genome Research 22: 246–258.
  • Iavicoli, I., V. Leso, L. Fontana, and A. Bergamaschi. 2011. “Toxicological Effects of Titanium dioxide Nanoparticles: A Review of In Vitro Mammalian Studies.” European Review for Medical and Pharmacological Sciences 15: 481–508.
  • Johnson, K. C., E. A. Houseman, J. E. King, K. M. Von Herrmann, C. E. Fadul, and B. C. Christensen. 2016. “5-Hydroxymethylcytosine Localizes to Enhancer Elements and is Associated with Survival in Glioblastoma Patients.” Nature Communications 7: 13177.
  • Kohli, R. M., and Y. Zhang. 2013. “TET Enzymes, TDG and the Dynamics of DNA Demethylation.” Nature 502: 472–479.
  • Koster, J., and S. Rahmann. 2012. “Snakemake-a Scalable Bioinformatics Workflow Engine.” Bioinformatics (Oxford, England) 28: 2520–2522.
  • Li, J., M. Tian, L. Cui, J. Dwyer, N. J. Fullwood, H. Shen, and F. L. Martin. 2016. “Low-dose Carbon-based Nanoparticle-induced Effects in A549 Lung Cells Determined by Biospectroscopy are Associated with Increases in Genomic Methylation.” Scientific Reports 6: 20207.
  • Lu, X., I. R. Miousse, S. V. Pirela, S. Melnyk, I. Koturbash, and P. Demokritou. 2016. “Short-term Exposure to Engineered Nanomaterials Affects Cellular Epigenome.” Nanotoxicology 10: 140–150.
  • Maksimovic, J., L. Gordon, and A. Oshlack. 2012. “SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips.” Genome Biology 13: R44.
  • Mussa, T., C. Rodriguez-Carino, A. Sanchez-Chardi, M. Baratelli, M. Costa-Hurtado, L. Fraile, J. Dominguez, V. Aragon, and M. Montoya. 2012. “Differential Interactions of Virulent and Non-virulent H. parasuis Strains with Naïve or Swine Influenza Virus Pre-infected Dendritic Cells.” Veterinary Research 43: 80.
  • Nanogenotox 2011. http://www.nanogenotox.eu/files/PDF/Deliverables/nanogenotox%20deliverable%203wp4%20dispersion%20protocol.pdf
  • Nel, A. E., T. Xia, L. Madler, and N. Li. 2006. “Toxic Potential of Materials at the Nanolevel.” Science (New York, N.Y.) 311: 622–627.
  • Oberdörster, G., E. Oberdörster, and J. Oberdörster. 2005. “Nanotoxicology: An Emerging Discipline Evolving from Studies of Ultrafine Particles.” Environmental Health Perspectives 113: 823–839.
  • Portela, A., and M. Esteller. 2010. “Epigenetic Modifications and Human Disease.” Nature Biotechnology 28: 1057–1068.
  • Rodriguez-Carino, C., C. Duffy, A. Sanchez-Chardi, F. Mcneilly, G. M. Allan, and J. Segales. 2011. “Porcine Circovirus Type 2 Morphogenesis in a Clone Derived from the l35 Lymphoblastoid Cell Line.” Journal of Comparative Pathololgy 144: 91–102.
  • Sherry, S. T., M. H. Ward, M. Kholodov, J. Baker, L. Phan, E. M. Smigielski, and K. Sirotkin. 2001. “dbSNP: The NCBI Database of Genetic Variation.” Nucleic Acids Research 29: 308–311.
  • Sierra, M. I., A. F. Fernandez, and M. F. Fraga. 2015. “Epigenetics of Aging.” Current Genomics 16: 435–440.
  • Sierra, M. I., A. Valdes, A. F. Fernandez, R. Torrecillas, and M. F. Fraga. 2016. “The Effect of Exposure to Nanoparticles and Nanomaterials on the Mammalian Epigenome.” International Journal of Nanomedicine 11: 6297–6306.
  • Smolkova, B., N. El Yamani, A. R. Collins, A. C. Gutleb, and M. Dusinska. 2015. “Nanoparticles in Food. Epigenetic Changes Induced by Nanomaterials and Possible Impact on Health.” Food and Chemical Toxicology: An International Journal Published for the British Industrial Biological Research Association 77: 64–73.
  • Torano, E. G., G. F. Bayon, A. Del Real, M. I. Sierra, M. G. Garcia, A. Carella, T. Belmonte, et al. 2016. “Age-associated Hydroxymethylation in Human Bone-marrow Mesenchymal Stem Cells.” Journal of Translational Medicine 14: 207.
  • Vales, G., L. Rubio, and R. Marcos. 2015. “Long-term Exposures to Low Doses of Titanium dioxide Nanoparticles Induce Cell Transformation, but not Genotoxic Damage in BEAS-2B cells.” Nanotoxicology 9: 568–578.
  • Vila, L., L. Rubio, B. Annangi, A. Garcia-Rodriguez, R. Marcos, and A. Hernandez. 2017. “Frozen Dispersions of Nanomaterials are a Useful Operational Procedure in Nanotoxicology.” Nanotoxicology 11: 31–40.
  • Wilson, A. S., B. E. Power, and P. L. Molloy. 2007. “DNA Hypomethylation and Human Diseases.” Biochimica Et Biophysica Acta 1775: 138–162.
  • Wu, H., B. Caffo, H. A. Jaffee, R. A. Irizarry, and A. P. Feinberg. 2010. “Redefining CpG Islands using Hidden Markov Models.” Biostatistics 11: 499–514.
  • Yang, X., H. Han, D. D. De Carvalho, F. D. Lay, P. A. Jones, and G. Liang. 2014. “Gene Body Methylation Can Alter Gene Expression and is a Therapeutic Target in Cancer.” Cancer Cell 26: 577–590.
  • Yokel, R. A., and R. C. Macphail. 2011. “Engineered Nanomaterials: Exposures, Hazards, and Risk Prevention.” Journal of Occupational Medicine and Toxicology (London, England) 6: 7.

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