115
Views
0
CrossRef citations to date
0
Altmetric
Original Articles

Parallel computing and the Grid—experiences and applications

&
Pages 293-309 | Received 09 Jan 2006, Accepted 08 Aug 2006, Published online: 06 Apr 2009

References

  • AccessGrid, http://www.accessgrid.org .
  • Advanced Resource Connector, ARC, http://www.nordugrid.org/middleware .
  • Australian Partnership for Advanced Computing—APAC, http://www.apac.edu.au/ .
  • AustrianGrid, http://www.austriangrid.at .
  • Bochs—IA32 emulator project, http://bochs.sourceforge.net/ .
  • ChinaGrid, http://www.chinagrid.edu.cn/ .
  • CrossGrid, http://www.crossgrid.org .
  • D-Grid Initative, http://www.d-grid.de .
  • DEISA—Distributed European Infrastructure for Supercomputing Applications, http://www.deisa.org/ .
  • EDG—The DataGrid Project, http://eu-datagrid.web.cern.ch/eu-datagrid/ .
  • EGEE—Enabling Grids for E-sciencE, http://public.eu-egee.org .
  • FESWMS—Finite Element Surface Water Modeling, http://www.bossintl.com/html/feswms.html .
  • GEANT, http://www.geant.net/ .
  • gLite—Lightweight Middleware for Grid Computing, http://glite.web.cern.ch/glite/ .
  • Global Grid Forum, GGF, http://www.ggf.org .
  • Grid Physics Network, http://www.griphyn.org/ .
  • Grid3, http://www.ivdgl.org/grid3/ .
  • INFNGrid, http://grid.infn.it/ .
  • International Virtual Data Grid Laboratory, http://www.ivdgl.org/ .
  • Java, http://java.sun.com/ .
  • LCG—LHC Computing Grid Project, http://lcg.web.cern.ch/LCG/ .
  • LSF—Load Sharing Facility, http://accl.grc.nasa.gov/lsf/ .
  • MPI-Povray—Distributed Povray using MPI message passing, http://www.verrall.demon.co.uk/mpipov/ .
  • NAREGI, http://www.naregi.org/ .
  • Nimrod/G, http://www.csse.monash.edu.au/davida/nimrod/nimrodg.htm .
  • NorduGrid, http://www.nordugrid.org/ .
  • NorduGrid, http://www.nordugrid.org/about.html .
  • OpenScienceGrid, http://www.opensciencegrid.org/ .
  • Particle Physics Data Grid, http://www.ppdg.net/ .
  • PBS—Portable Batch System, http://www.altair.com/software/pbspro.htm .
  • Povray—The Persistence of Vision Raytracer, http://www.povray.org/ .
  • TeraGrid, http://www.teragrid.org .
  • The Virtual Data Toolkit—VDT, http://vdt.cs.wisc.edu/index.html .
  • Top500, http://www.top500.org/lists/2006/06/ .
  • UK e-Science, http://www.rcuk.ac.uk/escience/ .
  • UK National Grid Service (NGS), http://www.ngs.ac.uk/ .
  • UNICORE, http://www.unicore.org .
  • Vega Center, http://vega.ict.ac.cn/ .
  • VMware, http://www.vmware.com/ .
  • Allen , G. , Goodale , T. , Russel , M. , Seidel , E. and Shalf , J. 2003 . “ Classifying and enabling Grid applications ” . In Grid Computing: Making the Global Infrastructure a Reality , Edited by: Berman , F. , Fox , G. and Hey , A. 601 – 614 . New York : Wiley .
  • Artoli, A.M.M., Mesoscopic computational haemodynamics, PhD thesis, University of Amsterdam, Amsterdam, The Netherlands, October 2003. Promotor: Prof. Dr. P.M.A. Sloot, Co-promotor: Dr. Ir. A.G. Hoekstra.
  • Artoli , A.M.M. , Hoekstra , A.G. and Sloot , P.M.A. 2002 . 3d pulsatile flow with the lattice boltzmann bgk method . International Journal of Modern Physics C , 13 ( 8 ) : 1119 – 1134 . October
  • Artoli , A.M.M. , Hoekstra , A.G. and Sloot , P.M.A. 2003 . Simulation of a systolic cycle in a realistic artery with the lattice boltzmann bgk method . International Journal of Modern Physics B , 17 ( 1&2 ) : 95 – 98 .
  • Artoli , A.M.M. , Hoekstra , A.G. and Sloot , M.A. 2005 . Mesoscopic simulations of systolic flow in the human abdominal aorta . Journal of Biomechanics , 39 ( 5 ) : 873 – 884 .
  • Baduel , L. , Baude , F. , Caromel , D. , Contes , A. , Huet , F. , Morel , M. and Quilici , R. 2006 . Grid Computing: Software Environments and Tools , New York : Springer-Verlag . chapter Programming, Deploying, Composing, for the Grid
  • Barham , P. , Dragovic , B. , Fraser , K. , Hand , S. , Harris , T. , Ho , A. , Neugebauer , R. , Pratt , I. and Warfield , A. 2003 . “ Xen and the art of virtualization ” . In SOSP'03: Proceedings of the Nineteenth ACM Symposium on Operating Systems Principles , 164 – 177 . New York, NY, USA : ACM Press .
  • Clark , B. , Deshane , T. , Dow , E. , Evanchik , S. , Finlayson , M. , Herne , J. and Matthews , J.N. 2004 . “ Xen and the art of repeated research ” . In USENIX Annual Technical Conference, FREENIX Track 135 – 144 .
  • Czajkowski , K. , Fitzgerald , S. , Foster , I. and Kesselman , C. 2001 . “ Grid information services for distributed resource sharing ” . In HPDC'01: Proceedings of the 10th IEEE International Symposium on High Performance Distributed Computing (HPDC-10'01) , 181 Washington, DC, USA : IEEE Computer Society .
  • Czajkowski , K. , Foster , I.T. , Karonis , N.T. , Kesselman , C. , Martin , S. , Smith , W. and Tuecke , S. 1998 . “ A resource management architecture for metacomputing systems ” . In IPPS/SPDP'98: Proceedings of the Workshop on Job Scheduling Strategies for Parallel Processing , 62 – 82 . London, UK : Springer-Verlag .
  • Eerola, P., Ekelöf, T., Ellert, M., Hansen, J.R., Konstantinov, A., Kónya, B., Nielsen, J.L., Ould-Saada, F., Smirnova, O. and Wäänänen, A., The nordugrid architecture and tools, CoRR, physics/0306002.
  • Foster , I. and Kesselman , C. 1997 . Globus: a metacomputing infrastructure toolkit . The International Journal of Supercomputer Applications and High Performance Computing , 11 ( 2 ) : 115 – 128 . Summer
  • Foster, I., Kesselman, C., Nick, J. and Tuecke, S., 2002, The physiology of the grid: an open grid services architecture for distributed systems integration.
  • Foster , I. , Kesselman , C. and Tuecke , S. 2001 . The anatomy of the grid: enabling scalable virtual organizations . International Journal of Supercomputer Applications , 15 ( 3 )
  • Foster, I., Kishimoto, H., Savva, A., Berry, D., Grimshaw, A., Djaoui, A., Horn, B., Maciel, F., Siebenlist, F., Subramaniam, R., Treadwell, J. and Von Reich, J., The open grid services architecture, http://www.gridforum.org/documents/GFD.30.pdf .
  • Foster , I. 1995 . Designing and Building Parallel Programs: Concepts and Tools for Parallel Software Engineering , Boston, MA, USA : Addison-Wesley Longman Publishing Co., Inc. .
  • Foster , I. 2005 . Service-oriented science . Science , 308 ( 5723 ) : 814 – 817 .
  • Foster , I. and Kesselman , C. , eds. 1999 . The Grid: Blueprint for a New Computing Infrastructure , San Francisco, CA, USA : Morgan Kaufmann Publishers Inc. .
  • Foster , I. , Kesselman , C. , Tsudik , G. and Tuecke , S. 1998 . “ A security architecture for computational grids ” . In CCS'98: Proceedings of the 5th ACM Conference on Computer and Communications Security , 83 – 92 . New York, NY, USA : ACM Press .
  • Frey , J. , Tannenbaum , T. , Foster , I. , Livny , M. and Tuecke , S. 2002 . Condor-G: a computation management agent for multi-institutional grids . Cluster Computing , 5 : 237 – 246 .
  • Futral , W. 2001 . InfiniBand Architecture: Development and Deployment—A Strategic Guide to Server I/O Solutions , Intel press .
  • Glassner , A.S. , ed. 1989 . An Introduction to Ray Tracing , London, UK : Academic Press Ltd .
  • Hey , T. and Trefethen , A.E. 2005 . Cyberinfrastructure for e-Science . Science , 308 ( 5723 ) : 817 – 821 .
  • Hluchy , L. , Habala , O. , Tran , V.D. , Simo , B. , Astalos , J. and Dobrucky , M. 2004 . “ Infrastructure for grid-based virtual organizations ” . In Proceedings of the International Conference on Computational Science, Part III, LNCS 3038 , 124 – 131 . New York : Springer Verlag . June
  • Hluchý , L. , Astalos , J. , Dobrucký , M. , Habala , O. , Simo , B. Tran , V.D. Flood Forecasting in a Grid Computing Environment Edited by: Wyrzykowski . 831 – 839 . [79]
  • Holland, J., 1975, Adaptation in natural and artificial system.
  • Houstis , E.N. , Rice , J.R. and Bramley , R. , eds. 2000 . Enabling Technologies for Computational Science: Frameworks, Middleware and Environments , Norwell, MA, USA : Kluwer Academic Publishers .
  • Jordan , L.E. and Alaghband , G. 2002 . Fundamentals of Parallel Processing , Upper Saddle River, NJ : Prentice Hall Professional Technical Reference .
  • Kandhai , B.D. , Koponen , A. , Hoekstra , A.G. , Kataja , M. , Timonen , J. and Sloot , M.A. 1998 . Lattice boltzmann hydrodynamics on parallel systems . Computer Physics Communications , 111 : 14 – 26 .
  • Litzkow , M. , Livny , M. and Mutka , M. 1988 . “ Condor—a hunter of idle workstations ” . In Proceedings of the 8th International Conference of Distributed Computing Systems June
  • Livny , M. and Raman , R. 1998 . “ High-throughput resource management ” . In The Grid: Blueprint for a New Computing Infrastructure , Edited by: Foster , I. and Kesselman , C. 311 – 337 . San Mateo, CA : Morgan Kaufmann .
  • Mitchell , M. 1996 . An Introduction to Genetic Algorithms , Cambridge, MA, USA : MIT Press .
  • Nguyen , T.-A. and Kuonen , P. 2003 . “ An object-oriented framework for efficient data access in data intensive computing ” . In Parallel and Distributed Processing Symposium 164 – 171 .
  • Praxmarer , P. , Heinzlreiter , P. , Kapferer , W. , Kranzlmueller , D. and Volkert , J. 2005 . “ Semiautomatic generation of transfer functions through grid-based parameter studies ” . In Tagungsband: Grid-Technologie für den Entwurf technischer Systeme (Grid4TS) , 48 – 55 . Germany : Dresden . April
  • Sloot, P.M.A., Tirado-Ramos, A., Hoekstra, A.G. and Bubak, M., 2004, An interactive grid environment for non-invasive vascular reconstruction, 2nd International Workshop on Biomedical Computations on the Grid (BioGrid'04), in conjunction with Fourth IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid2004), Chicago, Illinois, USA, April 2004. IEEE.
  • Succi , S. 2001 . The Lattice Boltzmann Equation, For Fluid Dynamics and Beyond , Oxford : Oxford University Press .
  • Tirado-Ramos , A. , Sloot , P.M.A. , Hoekstra , A.G. and Bubak , M. 2004 . An integrative approach to high-performance biomedical problem solving environments on the grid . Parallel Computing , 30 ( 9–10 ) : 1037 – 1055 .
  • Tran , V.D. and Hluchý , L. 2004 . “ Parallelizing flood models with mpi: approaches and experiences ” . In International Conference on Computational Science , Edited by: Bubak , M. , Dick van Albada , G. , Sloot , P.M.A. and Dongarra , J. 425 – 428 . Berlin : Springer . volume 3036 of Lecture Notes in Computer Science
  • Tran , V.D. , Hluchý , L. , Froehlich , D. Castaings , W. Parallelizing Flood Model for Linux Clusters with mpi Edited by: Wyrzykowski . 521 – 527 .
  • Wyrzykowski , R. , Dongarra , J. , Paprzycki , M. and Wasniewski , J. , eds. 2004 . Parallel Processing and Applied Mathematics, 5th International Conference, PPAM 2003, Czestochowa, Poland, September 7–10, 2003. Revised Papers , Berlin : Springer . volume 3019 of Lecture Notes in Computer Science
  • Zomaya , A.Y.H. , ed. 1996 . Parallel and Distributed Computing Handbook , 981 – 1002 . New York, NY, USA : McGraw-Hill, Inc. . chapter 34

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.