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ORIGINAL ARTICLES

Microbial community diversity associated with Sarcotragus sp. and Petrosia ficiformis from the Aegean Sea based on 16S rDNA-DGGE fingerprinting

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Pages 321-329 | Accepted 19 Mar 2014, Published online: 30 Sep 2014

References

  • Amann RI, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 59:143–69.
  • Baker PW, Kennedy J, Dobson AD, Marchesi JR. 2009. Phylogenetic diversity and antimicrobial activities of fungi associated with Haliclona simulans isolated from Irish coastal waters. Marine Biotechnology 11:540–47. 10.1007/s10126-008-9169-7
  • Bandaranayake WM, Bemis JE, Bourne DJ. 1996. Ultraviolet absorbing pigments from the marine sponge Dysidea herbacea: Isolation and structure of a new mycosporine. Comparative Biochemistry and Physiology C 115:281–86. 10.1016/0305-0491(96)00112-5
  • Bougoure DS, Cairney JW. 2005. Fungi associated with hair roots of Rhododendron lochiae (Ericaceae) in an Australian tropical cloud forest revealed by culturing and culture-independent molecular methods. Environmental Microbiology 7:1743–54. 10.1111/j.1462-2920.2005.00919.x
  • Carlson JC, Li SY, Burr DA, Sherman DH. 2009. Isolation and characterization of tirandamycins from a marine-derived Streptomyces sp. Journal of Natural Products 72:2076–79. 10.1021/np9005597
  • Chelossi E, Milanese M, Milano A, Pronzato R, Riccardi G. 2004. Characterisation and antimicrobial activity of epibiotic bacteria from Petrosia ficiformis (Porifera, Demospongiae). Journal of Experimental Marine Biology and Ecology 309:21–33. 10.1016/j.jembe.2004.03.006
  • Cimino G, Degiulio A, Derosa S, Destefano S, Sodano G. 1985. Further high molecular-weight polyacetylenes from the sponge Petrosia ficiformis. Journal of Natural Products 48:22–27. 10.1021/np50037a004
  • Cimino G, Degiulio A, Derosa S, Dimarzo V. 1990. Minor bioactive polyacetylenes from Petrosia ficiformis. Journal of Natural Products 53:345–53. 10.1021/np50068a012
  • Dunlap WC, Battershill CN, Liptrot CH, Cobb RE, Bourne DG, Jaspars M, et al. 2007. Biomedicinals from the phytosymbionts of marine invertebrates: A molecular approach. Methods 42:358–76. 10.1016/j.ymeth.2007.03.001
  • Engelhardt K, Degnes KF, Kemmler M, Bredholt H, Fjaervik E, Klinkenberg G, et al. 2010. Production of a new thiopeptide antibiotic, TP-1161, by a marine Nocardiopsis species. Applied Environmental Microbiology 76:4969–76. 10.1128/AEM.00741-10
  • Felsenstein J. 1985. Confidence-limits on phylogenies – An approach using the bootstrap. Evolution 39:783–91. 10.2307/2408678
  • Fotie J, Morgan RE. 2008. Depsipeptides from microorganisms: A new class of antimalarials. Mini-Reviews in Medicinal Chemistry 8:1088–94. 10.2174/138955708785909916
  • Fremlin L, Farrugia M, Piggott AM, Khalil Z, Lacey E, Capon RJ. 2011. Reveromycins revealed: New polyketide spiroketals from Australian marine-derived and terrestrial Streptomyces spp. A case of natural products vs. artifacts. Organic & Biomolecular Chemistry 9:1201–11. 10.1039/c0ob00654h
  • Gallego V, Garcia MT, Ventosa A. 2005. Methylobacterium variabile sp. nov., a methylotrophic bacterium isolated from an aquatic environment. International Journal of Systematic & Evolutionary Microbiology 55:1429–33. 10.1099/ijs.0.63597-0
  • Gerce B, Schwartz T, Syldatk C, Hausmann R. 2011. Differences between bacterial communities associated with the surface or tissue of Mediterranean sponge species. Microbial Ecology 6:769–82. 10.1007/s00248-011-9802-2
  • Graca AP, Bondoso J, Gaspar H, Xavier JR, Monteiro MC, de la Cruz M, et al. 2013. Antimicrobial activity of heterotrophic bacterial communities from the marine sponge Erylus discophorus (Astrophorida, Geodiidae). PLOS One 8:e78992. 10 pages. 10.1371/journal.pone.0078992
  • Guo YW, Gavagnin M, Salierno C, Cimino G. 1998. Further petroformynes from both Atlantic and Mediterranean populations of the sponge Petrosia ficiformis. Journal of Natural Products 61:333–37. 10.1021/np970424f
  • Hentschel U, Hopke J, Horn M, Friedrich AB, Wagner M, Hacker J, et al. 2002. Molecular evidence for a uniform microbial community in sponges from different oceans. Applied Environmental Microbiology 68:4431–40. 10.1128/AEM.68.9.4431-4440.2002
  • Hentschel U, Usher KM, Taylor MW. 2006. Marine sponges as microbial fermenters. FEMS Microbiology Ecology 55:167–77. 10.1111/j.1574-6941.2005.00046.x
  • Khalil MW, Durham LJ, Djerassi C, Sica D. 1980. Ficisterol (23-ethyl-24-methyl-27-norcholesta-5,25-dien-3-beta-Ol) – Biosynthetically unprecedented sterol from the marine sponge Petrosia ficiformis. Journal of the American Chemical Society 102:2133–34. 10.1021/ja00526a083
  • Laport MS, Santos OCS, Muricy G. 2009. Marine sponges: Potential sources of new antimicrobial drugs. Current Pharmacological Biotechnology 10:86–105. 10.2174/138920109787048625
  • Li J, Gu JD. 2007. Complete degradation of dimethyl isophthalate requires the biochemical cooperation between Klebsiella oxytoca Sc and Methylobacterium mesophilicum Sr isolated from wetland sediment. Science of the Total Environment 380:181–87. 10.1016/j.scitotenv.2006.12.033
  • Li LN, Kato C, Horikoshi K. 1999. Bacterial diversity in deep-sea sediments from different depths. Biodiversity & Conservation 8:659–77. 10.1023/A:1008848203739
  • Li QZ, Wang GY. 2009. Diversity of fungal isolates from three Hawaiian marine sponges. Microbiological Research 164:233–41. 10.1016/j.micres.2007.07.002
  • Li ZY, Liu Y. 2006. Marine sponge Craniella austrialiensis-associated bacterial diversity revelation based on 16S rDNA library and biologically active Actinomycetes screening, phylogenetic analysis. Letters in Applied Microbiology 43:410–16. 10.1111/j.1472-765X.2006.01976.x
  • Li ZY, He LM, Wu H, Jiang Q. 2006. Bacterial community diversity associated with four marine sponges from the South China Sea based on 16S rDNA-DGGE fingerprinting. Journal of Experimental Marine Biology and Ecolology 329:75–85. 10.1016/j.jembe.2005.08.014
  • Liu YH, Bae BH, Alam N, Hong J, Sim CJ, Lee CO, et al. 2001. New cytotoxic sesterterpenes from the sponge Sarcotragus species. Journal of Natural Products 64:1301–04. 10.1021/np0101494
  • Lopez-Cortes A, Lanz-Landazuri A, Garcia-Maldonado JQ. 2008. Screening and isolation of PHB-producing bacteria in a polluted marine microbial mat. Microbial Ecology 56:112–20. 10.1007/s00248-007-9329-8
  • Muscholl-Silberhorn A, Thiel V, Imhoff JF. 2008. Abundance and bioactivity of cultured sponge-associated bacteria from the Mediterranean Sea. Microbial Ecology 55:94–106. 10.1007/s00248-007-9255-9
  • Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied Environmental Microbiology 59:695–700.
  • Ozcan T, Katagan T. 2011. Decapod crustaceans associated with the sponge Sarcotragus muscarum Schmidt, 1864 (Porifera: Demospongiae) from the Levantine coasts of Turkey. Iran Journal of Fisheries Science 10:286–93.
  • Ribeiro SM, Bianco EM, Rogers R, Teixeira VL, Pereira RC. 2010. Chemical defense of Hymeniacidon heliophila (Porifera: Halicondrida) against tropical predators. Brazilian Journal of Oceanography 58:315–21.
  • Sagar S, Kaur M, Minneman KP. 2010. Antiviral lead compounds from marine sponges. Marine Drugs 8:2619–38. 10.3390/md8102619
  • Saitou N, Nei M. 1987. The neighbor-joining method – A new method for reconstructing phylogenetic trees. Molecular Biology & Evolution 4:406–25.
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology & Evolution 28:2731–39. 10.1093/molbev/msr121
  • Taylor MW, Schupp PJ, Dahllof I, Kjelleberg S, Steinberg PD. 2004. Host specificity in marine sponge-associated bacteria, and potential implications for marine microbial diversity. Environmental Microbiology 6:121–30. 10.1046/j.1462-2920.2003.00545.x
  • Taylor MW, Schupp PJ, de Nys R, Kjelleberg S, Steinberg PD. 2005. Biogeography of bacteria associated with the marine sponge Cymbastela concentrica. Environmental Microbiology 7:419–33. 10.1111/j.1462-2920.2004.00711.x
  • Taylor MW, Radax R, Steger D, Wagner M. 2007. Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential. Microbiology & Molecular Biology Reviews 71:295–347. 10.1128/MMBR.00040-06
  • Van Dyck S, Caulier G, Todesco M, Gerbaux P, Fournier I, Wisztorski M, et al. 2011. The triterpene glycosides of Holothuria forskali: Usefulness and efficiency as a chemical defense mechanism against predatory fish. Journal of Experimental Biology 214:1347–56. 10.1242/jeb.050930
  • Wang N, Song J, Jang KH, Lee HS, Li X, Oh KB, et al. 2008. Sesterterpenoids from the sponge Sarcotragus sp. Journal of Natural Products 71:551–57. 10.1021/np0780147
  • Wehrl M, Steinert M, Hentschel U. 2007. Bacterial uptake by the marine sponge Aplysina aerophoba. Microbial Ecology 53:355–65. 10.1007/s00248-006-9090-4
  • Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 1991. 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology 173:697–703.
  • Wiese J, Ohlendorf B, Blumel M, Schmaljohann R, Imhoff JF. 2011. Phylogenetic identification of fungi isolated from the marine sponge Tethya aurantium and identification of their secondary metabolites. Marine Drugs 9:561–85. 10.3390/md9040561

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