Vertical distance from drainage drives floristic composition changes in an Amazonian rainforest

References

• Albernaz , AL , Pressey , RL , Costa , LRF , Moreira , MP , Ramos , JF , Assunção , PA and Franciscon , CH. 2012 . Tree species compositional change and conservation implications in the white-water flooded forests of the Brazilian Amazon . Journal of Biogeography , 39 : 869 – 883 .
   Web of Science ®Google Scholar
• Baldwin , DS and Mitchell , AM. 2000 . The effects of drying and re-flooding on the sediment and soil nutrient dynamics of soil lowland river-floodplain systems: a synthesis . Regulated Rivers: Research and Managment , 467 : 457 – 467 .
   Google Scholar
• Balvanera , P , Quijas , S and Pérez-Jiménez . 2011 . Distribution patterns of tropical dry forest trees along a mesoscale water availability gradient . Biotropica , 43 : 414 – 422 .
   Web of Science ®Google Scholar
• Becker , P and Castillo , A. 1990 . Root architecture of shrubs and saplings in the understory of a tropical moist forest in lowland Panama . Biotropica , 22 : 242 – 249 .
   Web of Science ®Google Scholar
• Bell , JC , Cunningham , RL and Havens , MW. 1994 . Soil drainage class probability mapping using a soil-landscape model . Soil Science Society of America Journal , 58 : 464 – 470 .
   Web of Science ®Google Scholar
• Brown , DJ , Clayton , MK and McSweeney , K. 2004 . Potential terrain controls on soil color, texture contrast and grain-size deposition for the original catena landscape in Uganda . Geoderma , 122 : 51 – 72 .
   Web of Science ®Google Scholar
• Burnham , KP and Anderson , DR. 2004 . Multimodel inference: understanding AIC and BIC in model selection . Sociological Methods & Research , 33 : 261 – 304 .
   Web of Science ®Google Scholar
• Calcagno , V and De Mazancourt , C. 2010 . glmulti: An R package for easy automated model selection with (generalized) linear models . Journal of Statistical Software , 34 : 1 – 29 .
   Web of Science ®Google Scholar
• Campling , P , Gobin , A and Feyen , J. 2002 . Logistic modeling to spatially predict the probability of soil drainage classes . Soil Science Society of America Journal , 66 : 1390 – 1401 .
   Web of Science ®Google Scholar
• Canadell , J , Jackson , RB , Ehleringer , JR , Mooney , HA , Sala , OE and Schulze , ED. 1996 . Maximum rooting depth of vegetation types at the global scale . Oecologia , 108 : 583 – 595 .
   PubMed Web of Science ®Google Scholar
• Chauvel , A , Lucas , Y and Boulet , R. 1987 . On the genesis of the soil mantle of the region of Manaus, Central Amazonia, Brazil . Experimentia , 43 : 234 – 241 .
   Google Scholar
• Clark , C , Poulsen , J , Bolker , B , Connor , E and Parker , V. 2005 . Comparative seed shadows of bird-, monkey-, and wind-dispersed trees . Ecology , 86 : 2684 – 2694 .
   Web of Science ®Google Scholar
• Colwell , RK , Brehm , G , Cardelús , CL , Gilman , AC and Longino , JT. 2008 . Global warming, elevational range shifts, and lowland biotic attrition in the wet tropics . Science , 322 : 258
   PubMed Web of Science ®Google Scholar
• Comita , LS and Engelbrecht , BMJ. 2009 . Seasonal and spatial variation in water availability drive habitat associations in a tropical forest . Ecology , 90 : 2755 – 2765 .
   PubMed Web of Science ®Google Scholar
• Costa , FRC , Guillaumet , J-L , Lima , A and Pereira , O. 2009 . Gradients within gradients: the mesoscale distribution patterns of palms in a central Amazonian forest . Journal of Vegetation Science , 20 : 69 – 78 .
   Web of Science ®Google Scholar
• Costa , FRC , Magnusson , WE and Luizao , RC. 2005 . Mesoscale distribution patterns of Amazonian understorey herbs in relation to topography, soil and watersheds . Journal of Ecology , 93 : 863 – 878 .
   Web of Science ®Google Scholar
• Costa , FRC and Magnusson , WE. 2010 . The need for large-scale, integrated studies of biodiversity – the experience of the Program for Biodiversity Research in Brazilian Amazonia . Natureza & Conservação , 08 : 3 – 12 .
   Google Scholar
• Costa , FRC. 2006 . Mesoscale gradients of herb richness and abundance in central Amazonia . Biotropica , 38 : 711 – 717 .
   Web of Science ®Google Scholar
• Cox , PM , Betts , RA , Jones , CD , Spall , SA and Totterdell , IJ. 2000 . Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model . Nature , 408 : 184 – 187 .
   PubMed Web of Science ®Google Scholar
• Cox , PM , Harris , PP , Huntingford , C , Betts , RA , Collins , M , Jones , CD , Jupp , TE , Marengo , JA and Nobre , CA. 2008 . Increasing risk of Amazonian drought due to decreasing aerosol pollution . Nature , 453 : 212 – 215 .
   PubMed Web of Science ®Google Scholar
• Dalling , J , Hubbell , SP and Silvera , K. 1998 . Seed dispersal, seedling establishment and gap partitioning among tropical pioneer trees . Journal of Ecology , 86 : 674 – 689 .
   Web of Science ®Google Scholar
• Davidson , EA , De Araújo , AC , Artaxo , P , Balch , JK , Brown IF , C. , Bustamante , MM , Coe , MT , DeFries , RS , Keller , M Longo , M . 2012 . The Amazon basin in transition . Nature , 481 : 321 – 328 .
   PubMed Web of Science ®Google Scholar
• Daws , MI , Mullins , CE , Burslem , DFRP , Paton , SR and Dalling , JW. 2002 . Topographic position affects the water regime in a semideciduous tropical forest in Panama . Plant and Soil , 238 : 79 – 90 .
   Web of Science ®Google Scholar
• Drucker , DP , Costa , FRC and Magnusson , WE. 2008 . How wide is the riparian zone of small streams in tropical forests? A test with terrestrial herbs . Journal of Tropical Ecology , 24 : 65 – 74 .
   Web of Science ®Google Scholar
• Engelbrecht , BMJ , Comita , LS , Condit , R , Kursar , TA , Tyree , MT , Turner , BL and Hubbell , SP. 2007 . Drought sensitivity shapes species distribution patterns in tropical forests . Nature , 447 : 80 – 2 .
   PubMed Web of Science ®Google Scholar
• Gibbons , JM and Newbery , DM. 2002 . Drought avoidance and the effect of local topography on trees in the understorey of Bornean lowland rain forest . Plant Ecology , 164 : 1 – 18 .
   Web of Science ®Google Scholar
• Groom , PK. 2004 . Rooting depth and plant water relations explain species distribution patterns within a sandplain landscape . Functional Plant Biology , 31 : 423 – 428 .
   PubMed Web of Science ®Google Scholar
• Harms , KE. 1997 . Habitat-specialization and seed-dispersal limitation in a neotropical forest , Princeton , NJ : Princeton University .
   Google Scholar
• Hodnett , MG and Tomasella , J. 2002 . Marked differences between van Genuchten soil water-retention parameters for temperate and tropical soils: a new water-retention pedo-transfer functions developed for tropical soils . Geoderma , 108 : 155 – 180 .
   Web of Science ®Google Scholar
• Hodnett , MG , Vendrame , I , Marques Filho , DO , Oyama , M and Tomasella , J. 1997 . Soil water storage and groundwater behaviour in a catenary sequence beneath forest in central Amazonia: I . Comparisons between plateau, slope and valley floor. Hydrology and Earth System Sciences , 1 : 265 – 277 .
   Web of Science ®Google Scholar
• Jackson , RB , Canadell , J , Ehleringer , HA , Mooney , HA , Schulze , ED and Sala , OE. 1996 . A global analysis of root distributions for terrestrial biomes . Oecologia , 108 : 389 – 411 .
   PubMed Web of Science ®Google Scholar
• Jirka , S , McDonald , AJ , Johnson , MS , Feldpausch , TR , Couto , EG and Riha , SJ. 2007 . Relationships between soil hydrology and forest structure and composition in the southern Brazilian Amazon . Journal of Vegetation Science , 18 : 183 – 194 .
   Web of Science ®Google Scholar
• Joly , CA and Crawford , RMM. 1982 . Variation in tolerance and metabolic responses to flooding in some tropical trees . Journal of Experimental Botany , 33 : 799 – 809 .
   Web of Science ®Google Scholar
• Joslin , JD , Wolfe , MH and Hanson , PJ. 2000 . Effects of altered water regimes on forest root systems . New Phytologist , 147 : 117 – 129 .
   Web of Science ®Google Scholar
• Junk , WJ. 1997 . The central Amazon floodplain: ecology of a pulsing system , Berlin , , Germany : Springer .
   Google Scholar
• Kanagaraj , R , Wiegand , T , Comita , LS and Huth , A. 2011 . Tropical tree species assemblages in topographical habitats change in time and with life stage . Journal of Ecology , 99 : 1441 – 1452 .
   Web of Science ®Google Scholar
• Kinupp , VF and Magnusson , WE. 2005 . Spatial patterns in the understorey shrub genus Psychotria in central Amazonia: effects of distance and topography . Journal of Tropical Ecology , 21 : 363 – 374 .
   Web of Science ®Google Scholar
• Kravchenko , AN , Bollero , GA , Omonode , RA and Bullock , DG. 2002 . Quantitative mapping of soil drainage classes using topographical data and soil electrical conductivity . Soil Science Society of America Journal , 66 : 235 – 243 .
   Google Scholar
• Magnusson , WE , Lima , AP , Luizão , R , Luizão , F , Costa , FRC , Castilho , CV and Kinupp , V. 2005 . RAPELD: a modification of the Gentry method for biodiversity surveys in long-term ecological research sites . Biota Neotropica , 5 : 19 – 24 .
   Google Scholar
• Malhi , Y , Aragão , L , Galbraith , D , Huntingford , C , Fisher , R , Zelazowski , P , Sitch , S , McSweeney , C and Meir , P. 2009 . Exploring the likelihood and mechanism of a climate-change-induced dieback of the Amazon rainforest . Proceedings of the National Academy of Science , 49 : 20610 – 20615 .
   Google Scholar
• Marengo , JA. 2004 . Interdecadal variability and trends of rainfall across the Amazon basin . Theoretical and Applied Climatology , 78 : 79 – 96 .
   Web of Science ®Google Scholar
• Marques-Filho , A , de , O , Ribeiro , M , de , NG , Santos , HM and Santos , JM. 1981 . Estudos climatologicos da Reserva Florestal Ducke – Manaus-AM. IV. Precipitacao . Acta Amazonica , 11 : 759 – 768 .
   Google Scholar
• Marshall , TJ , Holmes , JW and Rose , C. 1996 . Soil physics , 3rd , Cambridge , UK : Cambridge University Press .
   Google Scholar
• Marthews , TTR , Burslem , DFRPD , Paton , SRR , Yangüez , F and Mullins , CEE. 2008 . Soil drying in a tropical forest: three distinct environments controlled by gap size . Ecological Modelling , 216 : 369 – 384 .
   Web of Science ®Google Scholar
• McCune , B and Grace , AJB. 2002 . Analysis of ecological communities . MjM Software Design, Gleneden Beach, Oregon, USA. ,
   Google Scholar
• Naiman , RJ , Henri , D and Décamps , H. 1997 . The ecology of interfaces: riparian zones . Annual Review of Ecology and Systematics , 28 : 621 – 658 .
   Google Scholar
• Nepstad , DC , Carvalho , CR , Davidson , EA , Jipp , PH , Lefebvre , PA , Negreiros , GH , Silva , ED , Stone , TA , Trumbore , SE and Vieira , S. 1994 . The role of deep roots in the hydrological and carbon cycles of Amazonia forests and pastures . Nature , 372 : 666 – 669 .
   Web of Science ®Google Scholar
• Newbery , DM , Campbell , EJF , Proctor , J and Still , MJ. 1996 . Primary lowland dipterocarp forest at Danum Valley, Sabah, Malaysia . Species composition and patterns in the understorey. Vegetatio , 122 : 193 – 220 .
   Google Scholar
• Nobre , AD , Cuartas , LA , Hodnett , M , Rennó , CD , Rodrigues , G , Silveira , A , Waterloo , M and Saleska , S. 2011 . Height above the nearest drainage – a hydrologically relevant new terrain model . Journal of Hydrology , 404 : 13 – 29 .
   Web of Science ®Google Scholar
• Nogueira , A , Costa , FRC and Castilho , CV. 2011 . Liana abundance patterns: the role of ecological filters during development . Biotropica , 43 : 442 – 449 .
   Web of Science ®Google Scholar
• Oyama , MD. 2003 . A new climate-vegetation equilibrium state for tropical South America . Geophysical Research Letters , 30 : 10 – 13 .
   Google Scholar
• Ozinga , W , Schaminée , J , Bekker , R , Bonn , S , Poschold , P , Tackenberg , O , Bakker , J and Van Groenendael , JM. 2005 . Predictability of plant species composition from environmental conditions is constrained by dispersal limitation . Oikos , 108 : 555 – 561 .
   Web of Science ®Google Scholar
• Page , CN. 2002 . Ecological strategies in fern evolution: a neopteridological overview . Review of Palaeobotany and Palynology , 119 : 1 – 33 .
   Web of Science ®Google Scholar
• Parmentier , I and Hardy , OJ. 2009 . The impact of ecological differentiation and dispersal limitation on species turnover and phylogenetic structure of inselberg's plant communities . Ecography , 32 : 613 – 622 .
   Web of Science ®Google Scholar
• Parolin , P. 2002 . Submergence tolerance vs. escape from submergence: two strategies of seedling establishment in Amazonian floodplains . Environmental and Experimental Botany , 48 : 177 – 186 .
   Web of Science ®Google Scholar
• Phillips , OL , Aragão , LEOC , Lewis , SL , Fisher , JB , Lloyd , J , López-González , G , Malhi , Y , Monteagudo , A , Peacock , J Quesada , CA . 2009 . Drought sensitivity of the Amazon rainforest . Science , 323 : 1344 – 1347 .
   PubMed Web of Science ®Google Scholar
• Phillips , OL , Hall , P , Gentry , AH , Sawyer , SA and Vásquez , R. 1994 . Dynamics and species richness of tropical rain forests . Proceedings of the National Academy of Science , 91 : 2805 – 2809 .
   PubMed Web of Science ®Google Scholar
• Prates-Clark , CDC , Saatchi , SS and Agosti , D. 2008 . Predicting geographical distribution models of high-value timber trees in the Amazon Basin using remotely sensed data . Ecological Modelling , 211 : 309 – 323 .
   Web of Science ®Google Scholar
• Pyke , CR , Condit , R , Aguilar , S and Lao , S. 2001 . Floristic composition across a climatic gradient in a neotropical lowland forest . Journal of Vegetation Science , 12 : 553 – 566 .
   Web of Science ®Google Scholar
• R Core Team. 2011. R: A language and environment for statistical computing. R Foundation for Statistical Computing. Vienna, Austria. http://www.R-project.org/ (http://www.R-project.org/)
   Google Scholar
• Raes , N , Roos , MC , Slik , JWF , Van Loon , EE and ter Steege , H . 2009 . Botanical richness and endemicity patterns of Borneo derived from species distribution models . Ecography , 32 : 180 – 192 .
   Web of Science ®Google Scholar
• Ramos , A , Folegatti , MV , Bovi , MLA and Diotto , AV. 2009 . Distribuição espacial do sistema radicular da pupunheira em função de lâminas de irrigação . Irriga , 14 : 431 – 440 .
   Google Scholar
• Rennó , CD , Nobre , AD , Cuartas , LA , Soares , JV , Hodnett , MG , Tomasella , J and Waterloo , MJ. 2008 . HAND, a new terrain descriptor using SRTM-DEM: Mapping terra-firme rainforest environments in Amazonia . Remote Sensing of Environment , 112 : 3469 – 3481 .
   Web of Science ®Google Scholar
• Restom , TG and Nepstad , DC. 2004 . Seedling growth dynamics of a deeply rooting liana in a secondary forest in eastern Amazonia . Forest Ecology and Management , 190 : 109 – 118 .
   Web of Science ®Google Scholar
• Ribeiro , JELS , Hopkins , MJG , Vicentini , A , Sothers , CA , Costa , MAS , Brito , JM , Souza , MAD , Martins , LH , Lohmann , LG Assunção , PA . 1999 . Flora da Reserva Ducke. Guia de identificação das plantas vasculares de uma floresta de terra firme na Amazônia Central , Manaus , Brazil : INPA – DFID .
   Google Scholar
• Rodriguez-Iturbe , I. 2000 . Ecohydrology: a hydrologic perspective of climate-soil-vegetation dynamics . Water Resources Research , 36 : 3 – 9 .
   Web of Science ®Google Scholar
• Saatchi , SS , Houghton , RA , Dos Santos Alvalá , RC , Soares , J V and Yu , Y. 2007 . Distribution of aboveground live biomass in the Amazon basin. ,
   Google Scholar
• Sabo , JL , Sponseller , MD , Gade , K , Harms , T , Heffernan , J , Jani , A , Katz , G , Soykan , C , Watts , J and Welter , J. 2005 . Riparian zones increase regional species richness by harboring different, not more, species . Ecology , 86 : 56 – 62 .
   Web of Science ®Google Scholar
• Salas , WA , Ducey , MJ , Rignot , E and Skole , D. 2002 . Assessment of JERS-1 SAR for monitoring secondary vegetation in Amazonia: I. Spatial and temporal variability in backscatter across a chrono-sequence of secondary vegetation stands in Rondonia . International Journal of Remote Sensing , 23 : 1357 – 1379 .
   Web of Science ®Google Scholar
• Scarano , FR , Ribeiro , KT , De Moraes , LFD and De Lima , HC. 1997 . Plant establishment on flooded and unflooded patches of a freshwater swamp forest in southeastern Brazil . Journal of Tropical Ecology , 14 : 793 – 803 .
   Web of Science ®Google Scholar
• Schnitzer , SA. 2005 . A mechanistic explanation for global patterns of liana abundance and distribution . The American Naturalist , 166 : 262 – 76 .
   PubMed Web of Science ®Google Scholar
• Schulman , L , Ruokolainen , K , Junikka , L , Sääksjärvi , IE , Salo , M , Juvonen , S-K , Salo , J and Higgins , M. 2007 . Amazonian biodiversity and protected areas: do they meet? . Biodiversity and Conservation , 16 : 3011 – 3051 .
   Web of Science ®Google Scholar
• Schöngart , J , Junk , WJ , Piedade , MTF , Ayres , JM , Huttermann , A , Worbes , M and Schongart , J. 2004 . Teleconnection between tree growth in the Amazonian floodplains and the El Nino-southern oscillation effect . Global Change Biology , 10 : 683 – 692 .
   Web of Science ®Google Scholar
• Silvertown , J , Dodd , M , Gowing , D and Mountford , J. 1999 . Hydrologically defined niches reveal a basis for species richness in plant communities . Nature , 400 : 61 – 63 .
   Web of Science ®Google Scholar
• Smith , LC. 2002 . Emerging applications of interferometric synthetic aperture radar (InSAR) in geomorphology and hydrology . Annals of the Association of American Geographers , 92 : 385 – 398 .
   Web of Science ®Google Scholar
• Svenning , J-C. 2001 . On the role of microenvironmental heterogeneity in ecology and diversification of neotropical rain-forest palms (Arecaceae) . The Botanical Review , 67 : 1 – 53 .
   Web of Science ®Google Scholar
• Terborgh , J , Loayza , PA , Dexter , K , Cornejo , F and Carrasco , C. 2011 . Decomposing dispersal limitation: limits on fecundity or seed distribution? . Journal of Ecology , 99 : 935 – 944 .
   Web of Science ®Google Scholar
• Toledo , JJ , Magnusson , WE , Castilho , CV and Nascimento , HEM. 2012 . Tree mode of death in central Amazonia: effects of soil and topography on tree mortality associated with storm disturbances . Forest Ecology and Management , 263 : 253 – 261 .
   Web of Science ®Google Scholar
• Tomasella , J , Hodnett , MG , Cuartas , LA , Nobre , AD , Waterloo , MJ and Oliveira , SM. 2008 . The water balance of an Amazonian micro-catchment: the effect of interannual variability of rainfall on hydrological behaviour . Hydrological Processes , 22 : 2133 – 2147 .
   Web of Science ®Google Scholar
• Tuomisto , H and Poulsen , AD. 2000 . Pteridophyte diversity and species composition in four Amazonian rain forests . Journal of Vegetation Science , 11 : 383 – 396 .
   Web of Science ®Google Scholar
• Valencia , R , Foster , RB , Villa , G , Svenning , J , Hernández , C , Romoleroux , K , Losos , E , Magård , E and Balslev , H. 2004 . Tree species distributions and local habitat variation in the Amazon: large forest plot in eastern Ecuador . Journal of Ecology , 92 : 214 – 229 .
   Web of Science ®Google Scholar
• Valeriano , M , Kuplich , T , Storino , M , Amaral , B , Mendesjr , J and Lima , D. 2006 . Modeling small watersheds in Brazilian Amazonia with shuttle radar topographic mission-90 m data . Computers & Geosciences , 32 : 1169 – 1181 .
   Web of Science ®Google Scholar
• Vormisto , J , Phillips , OL , Ruokolainen , K , Tuomisto , H and Vásques , R. 2000 . A comparison of fine-scale distribution patterns of four plant groups in an Amazonian rainforest . Ecography , 23 : 349 – 359 .
   Web of Science ®Google Scholar