1,413
Views
0
CrossRef citations to date
0
Altmetric
Brief Report

Genome-wide association study for milk production traits in an economically important local dairy sheep breed

ORCID Icon, , ORCID Icon, , ORCID Icon, & show all
Pages 1500-1505 | Received 20 Jul 2021, Accepted 29 Jul 2021, Published online: 07 Oct 2021

References

  • Aulchenko YS, de Koning DJ, Haley C. 2007. Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis. Genetics. 177(1):577–585.
  • Becker DK, Wimmers H, Luther A, Hofer T, Leeb A. 2013. A genome-wide association study to detect QTL for commercially important traits in Swiss Large White boars. PLOS One. 8(2):e55951.
  • Di Gerlando R, Sutera AM, Mastrangelo S, Tolone M, Portolano B, Sottile G, Bagnato A, Strillacci MP, Sardina MT. 2019. Genome-wide association study between CNVs and milk production traits in Valle del Belice sheep. PLOS One. 14(4):e0215204.
  • Du C, Deng T, Zhou Y, Ye T, Zhou Z, Zhang S, Shao B, Wei P, Sun H, Khan FA, et al. 2019. Systematic analyses for candidate genes of milk production traits in water buffalo (Bubalus Bubalis). Anim Genet. 50(3):207–216.
  • Ekine CC, Rowe SJ, Bishop SC, de Koning DJ. 2014. Why breeding values estimated using familial data should not be used for genome-wide association studies. G3. 4(2):341–347.
  • García-Gámez E, Gutiérrez-Gil B, Sahana G, Sánchez JP, Bayón Y, Arranz JJ. 2012. GWA analysis for milk production traits in dairy sheep and genetic support for a QTN influencing milk protein percentage in the LALBA gene. PLoS One. 7(10):e47782.
  • García-Gámez E, Gutiérrez-Gil B, Suarez-Vega A, de la Fuente LF, Arranz JJ. 2013. Identification of quantitative trait loci underlying milk traits in Spanish dairy sheep using linkage plus combined linkage disequilibrium and linkage analysis approaches. J Dairy Sci. 96(9):6059–6069.
  • Garrick DJ, Taylor JF, Fernando RL. 2009. Deregressing estimated breeding values and weighting information for genomic regression analyses. Genet Sel Evol. 41:55.
  • Gilmour AR, Gogel BJ, Cullis BR, Thompson R. 2009. ASReml user guide release 3.0VSN International Ltd, Hempstead, HP1 1ES UK.
  • Goddard ME, Hayes BJ. 2009. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat Rev Genet. 10(6):381–391.
  • Hall AM, Smith AJ, Bernlohr DA. 2003. Characterization of the Acyl-CoA synthetase activity of purified murine fatty acid transport protein 1. J Biol Chem. 278(44):43008–43013.
  • Jiang J, Ma L, Prakapenka D, VanRaden PM, Cole JB, Da Y. 2019. A large-scale genome-wide association study in US Holstein cattle. Front Genet. 10:412.
  • Johnston SE, McEwan JC, Pickering NK, Kijas JW, Beraldi D, Pilkington JG, Pemberton JM, Slate J. 2011. Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population. Mol Ecol. 20(12):2555–2566.
  • Jonas E, Thomson PC, Hall EJ, McGill D, Lam MK, Raadsma HW. 2011. Mapping quantitative trait loci (QTL) in sheep. IV. Analysis of lactation persistency and extended lactation traits in sheep. Genet Sel Evol. 43:1–10.
  • Kulig H, Kowalewska-Łucza KŻ, Żukowski K, Kunicka M, Kruszyński W. 2013. SLC27A1 SNPs in relation to breeding value of milk production traits in Polish Holstein-Friesian cows. Anim Sci Pap Rep. 31:273–279.
  • Li H, Wu XL, Tait RG, Bauck S, Thomas DL, Murphy TW, Rosa GJM. 2020. Genome‐wide association study of milk production traits in a crossbred dairy sheep population using three statistical models. Anim Genet. 51(4):624–628.
  • Liu L, Zhou J, Chen CJ, Zhang J, Wen W, Tian J, Zhang Z, Gu Y. 2020. Gwas-based identification of new loci for milk yield, fat, and protein in Holstein cattle. Animals. 10(11):2048.
  • Lv Y, Wei C, Zhang L, Lu G, Liu K, Du L. 2011. Association between polymorphisms in the SLC27A1 gene and milk produc-tion traits in Chinese Holstein cattle. Anim. Biotechnol. 22(1):1–6.
  • Mastrangelo S, Sottile G, Sutera AM, Di Gerlando R, Tolone M, Moscarelli A, Sardina MT, Portolano B. 2018. Genome-wide association study reveals the locus responsible for microtia in Valle del Belice sheep breed. Anim Genet. 49(6):636–640.
  • Mateescu RG, Thonney ML. 2010. Genetic mapping of quantitative trait loci for milk production in sheep. Anim Genet. 41(5):460–466.
  • Moioli B, D’Andrea M, Pilla F. 2007. Candidate genes affecting sheep and goat milk quality. Small Rumin Res. 68(1–2):179–192.
  • Nafikov RA, Schoonmaker JP, Korn KT, Noack K, Garrick DJ, Koehler K, Minick-Bormann J, Reecy JM, Spur-Lock D, Beitz DC. 2013. Association of polymorphisms in solute carrier family 27, isoform A6 (SLC27A6) and fatty acid-binding protein-3 and fatty acid-binding protein-4 (FABP3 and FABP4) with fatty acid composition of bovine milk. J Dairy Sci. 96(9):6007–6021.
  • Raadsma HW, Jonas E, McGill D, Hobbs M, Lam Thomson PC. 2009. Mapping quantitative trait loci (QTL) in sheep. II. Meta-assembly and identification of novel QTL for milk production traits in sheep. Genet Sel Evol. 41:45.
  • Sanchez M-P, Ramayo-Caldas Y, Wolf V, Laithier C, El Jabri M, Michenet A, Boussaha M, Taussat S, Fritz S, Delacroix-Buchet A, et al. 2019. Sequence-based GWAS, network and pathway analyses reveal genes co-associated with milk cheese-making properties and milk composition in Montbéliarde cows. Genet Sel Evol. 51(1):34.
  • Saridaki A, Antonakos G, Hager-Theodorides AL, Zoidis E, Tsiamis G, Bourtzis K, Kominakis A. 2019. Combined haplotype blocks regression and multi-locus mixed model analysis reveals novel candidate genes associated with milk traits in dairy sheep. Livest Sci. 220:8–16.
  • Scintu MF, Piredda G. 2007. Typicity and biodiversity of goat and sheep milk products. Small Rumin Res. 68(1–2):221–231.
  • Sell-Kubiak E, Duijvesteijn N, Lopes MS, Janss LLG, Knol EF, Bijma P, Mulder HA. 2015. Genome-wide association study reveals novel loci for litter size and its variability in a large white pig population. BMC Genomics. 16:1049.
  • Sevillano CA, Lopes MS, Harlizius B, Hanenberg EH, Knol EF, Bastiaansen JVM. 2015. Genome-wide association study using deregressed breeding values for cryptorchidism and scrotal/inguinal hernia in two pig lines. Genet Sel Evol. 47:18.
  • Solovieff N, Cotsapas C, Lee PH, Purcell SM, Smoller JW. 2013. Pleiotropy in complex traits: challenges and strategies. Nat Rev Genet. 14(7):483–495.
  • Sutera AM, Riggio V, Mastrangelo S, Di Gerlando R, Sardina MT, Pong‐Wong R, Tolone M, Portolano B. 2019. Genome-wide association studies for milk production traits in Valle del Belice sheep using repeated measures. Anim Genet. 50(3):311–314.
  • Sutera AM, Moscarelli A, Mastrangelo S, Sardina MT, Di Gerlando R, Portolano B, Tolone M. 2021. Genome-wide association study identifies new candidate markers for somatic cells score in a local dairy sheep. Front Genet. 12:643531.
  • Sutera AM, Tolone M, Mastrangelo S, Di Gerlando R, Sardina MT, Portolano B, Pong-Wong R, Riggio V. 2021. Detection of genomic regions underlying milk production traits in Valle del Belice dairy sheep using regional heritability mapping. J Anim Breed Genet.0:1–10
  • Usai MG, Casu S, Sechi T, Salaris SL, Miari S, Sechi S, Carta P, Carta A. 2019. Mapping genomic regions affecting milk traits in Sarda sheep by using the OvineSNP50 Beadchip and principal components to perform combined linkage and linkage disequilibrium analysis. Genet Sel Evol. 51(1):65.
  • Whyte J, Bergin O, Bianchi A, McNally S, Martin F. 2009. Key signalling nodes in mammary gland development and cancer. Mitogen-activated protein kinase signalling in experimental models of breast cancer progression and in mammary gland development. Breast Cancer Res. 11(5):209.
  • Wiener P, Edriss MA, Williams JL, Waddington D, Law A, Woolliams JA, Gutiérrez–Gil B. 2011. Information content in genome-wide scans: concordance between patterns of genetic differentiation and linkage mapping associations. BMC Genomics. 12:65.
  • Yang Y, Zhou QJ, Chen XQ, Yan BL, Guo XL, Zhang HL, Du AF. 2015. Profiling of differentially expressed genes in sheep T lymphocytes response to an artificial primary Haemonchus contortus infection. Parasit Vectors. 8:235.
  • Zhang L, Liu J, Zhao F, Ren H, Xu L, Lu J, Zhang S, Zhang X, Wei C, Lu G, et al. 2013. Genome-wide association studies for growth and meat production traits in sheep. PLoS One. 8(6):e66569.
  • Zhou C, Shen D, Li C, Cai W, Liu S, Yin H, Shi S, Cao M, Zhang S. 2019. Comparative transcriptomic and proteomic analyses identify key genes associated with milk fat traits in Chinese Holstein cows. Front Genet. 10:672.