Occurrence and molecular characterization of Pepper veinal mottle virus from solanaceous crops

References

• Adams, M., F. Zerbini, R. French, F. Rabenstein, D. Stenger, and J. Valkonen. 2011. Family Potyviridae, p. 1069–1089. In: A.M.Q. King, M.J. Adams, E.B. Carstens, and E.J. Lefkowitz eds. Virus taxonomy. 9th report of the International Committee for Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA.
   Google Scholar
• Adeyeye, E.I., and E.D. Fagbohun. 2006. Nutritional study of seven varieties of Nigeria garden egg fruits. J. Appl. Env. Sci. 2(1):129–135.
   Google Scholar
• Al-Ali, E.M., H. Al-Hashash, H. Al-Aqeel, and A.B. Hejji. 2012. Multiple important plant viruses are present on vegetable crops in Kuwait. J. Clin. Trials. 3:136–139. doi: 10.4172/2167-0870.1000136.
   Google Scholar
• Alegbejo, M.D. 1987. Identification of a weed host of Pepper veinal mottle virus in Northern Nigeria. Samaru J. Agric. Res 5(1):65–70.
   Google Scholar
• Ali, A., H. Li, W.L. Schneider, D.J. Sherman, S. Gray, D. Smith, and M.J. Roossinck. 2006. Analysis of genetic bottlenecks during horizontal transmission of Cucumber mosaic virus. J. Virol. 80(17):8345–8350. doi: 10.1128/JVI.00568-06.
   PubMed Web of Science ®Google Scholar
• Aliyu, T.H. 2014. The incidence, severity and occurrence of four viruses infecting pepper (Capsicum spp.) in the Southern Guinea Savannah Agro-ecological Zone of Nigeria. Agric. Consp. Sci 79(4):233–237.
   Google Scholar
• Altschul, S.F., G. Warren, M. Webb, W.M. Eugene, and J.L. David. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403–410. doi: 10.1016/S0022-2836(05)80360-2.
   PubMed Web of Science ®Google Scholar
• Arogundade, O., O.S. Balogun, S.O.S. Akinyemi, and P.L. Kumar. 2015. Survey of virus diseases on pepper (Capsicum spp.) in South-west Nigeria. Afr. J. Biotechnol. 14(48):3198–3205. doi: 10.5897/AJB2015.14803.
   Google Scholar
• Arogundade, O., O.S. Balogun, and K.T. Kareem. 2012. Occurrence and distribution of Pepper veinal mottle virus and Cucumber mosaic virus in pepper in Ibadan, Nigeria. Virol. J. 9(1):79–82. doi: 10.1186/1743-422X-9-79.
   PubMedGoogle Scholar
• Atiri, G.I. 1986. A disease of fluted pumpkin (Telfairia occidentalis Hook. F.) caused by a yellow vein clearing strain of Pepper veinal mottle virus in Nigeria. J. Plt. Prot. Trop 3:105–110.
   Google Scholar
• Atiri, G.I., and H.W. Dele. 1985. Pepper veinal mottle virus infection, host reaction, yield and aphid transmission in pepper plants. Trop. Agric. (Trinidad) 62:190–192.
   Web of Science ®Google Scholar
• Ayo-John, E.I., and O.O. Odedara. 2017. Serological detection of viruses infecting tomato and pepper in Southwest Nigeria and their distribution. Nig. J. Biotechnol. 33:78–82. doi: 10.4314/v33i1.11.
   Google Scholar
• Ayo-John, E.I., O.O. Odedara, B. Yekini, N. Raheem, and J. Oladokun. 2011. Occurrence of viruses infecting field-grown tomato in Ogun state Southwest Nigeria. Nig. J. Hort. Sci. 16:1–8.
   Google Scholar
• Betancourt, M., A. Fereres, A. Fraile, and F. García-Arenal. 2008. Estimation of the effective number of founders that initiate an infection after aphid transmission of a multipartite plant virus. J. Virol. 82:12 416–12 421. doi: 10.1128/JVI.01542-08.
   PubMed Web of Science ®Google Scholar
• Biddle, J.M., C. Linde, and R.C. Godfree. 2012. Co-infection patterns and geographic distribution of a complex pathosystem targeted by pathogen-resistant plants. Ecol. App. 22(1):35–52. doi: 10.1890/11-0341.1.
   PubMed Web of Science ®Google Scholar
• Blancard, D. 2012. Tomato diseases: Identification, biology and control. 2nd ed. CRC Press, Boca Raton, FL.
   Google Scholar
• Bolou-Bi, B.A., B. Moury, K. Abo, F. Sorho, M. Cherif, G. Girardot, N.P. Kouassi, and D. Kone. 2018. Survey of viruses infecting open-field pepper crops in Côte d’Ivoire and diversity of Pepper veinal mottle virus and Cucumber mosaic virus. Plt. Path. 67(6):1416–1425. doi: 10.1111/ppa.12849.
   Web of Science ®Google Scholar
• Chen, J., L. Chai, J. Hong, and H. Fankem. 2001. Occurrence of a severe mosaic disease affecting African eggplant (Solanum macrocarpon L.) and its pathogens in Cameroon. Pak. J. Biol. Sc. 4(9):1114–1117. doi: 10.3923/pjbs.2001.1114.1117.
   Google Scholar
• Daffala, G.A. 2000. Situation of tomato and pepper viruses in Africa, p. 18–24. In: J.D. Hughes and B.O. Odu (eds.). Plant virology in sub-Saharan Africa. International Institute of Tropical Agriculture, Ibadan, Nigeria.
   Google Scholar
• Doyle, J.J., and J.L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19:11–15.
   Google Scholar
• Gao, F., J. Jin, W. Zou, F. Liao, and J. Shen. 2016. Geographically driven adaptation of Chilli veinal mottle virus revealed by genetic diversity analysis of the coat protein gene. Arch. Vir. 161(5):1329–1333. doi: 10.1007/s00705-016-2761-7.
   PubMed Web of Science ®Google Scholar
• García-Arenal, F., A. Fraile, and J.M. Malpica. 2001. Variability and genetic structure of plant virus populations. Annu Rev Phytopathol. 39:157–186. doi: 10.1146/annurev.phyto.39.1.157.
   PubMed Web of Science ®Google Scholar
• Hall, T.A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Sym. Ser. 41:95–98. doi: 10.1021/bk-1999-0734.ch008.
   Google Scholar
• Ibeawuchi, I.I., N.A. Okoli, R.A. Alagba, M.O. Ofor, L.C. Emma-Okafor, C.A. Peter-Onoh, and J.C. Obiefuna. 2015. Fruit and vegetable crop production in Nigeria: The gains, challenges and the way forward. J. Bio. Agric. Health 5(2):194–208.
   Google Scholar
• Ladipo, J.L., D.-E. Lesemann, and R. Koenig. 1988. Further studies on a virus causing a green mosaic of eggplant in Nigeria. J. Phytopathol. 121:159–165. doi: 10.1111/j.1439-0434.1988.tb00967.x.
   Web of Science ®Google Scholar
• Moury, B., A. Palloix, C. Caranta, P. Gognalons, S. Souche, K.G. Selassie, and G. Marchoux. 2005. Serological, molecular, and pathotype diversity of Pepper veinal mottle virus and Chili veinal mottle virus. Phytopathology 95(3):227–232. doi: 10.1094/PHYTO-95-0227.
   PubMed Web of Science ®Google Scholar
• Nigam, D., K. LaTourrette, P.F.N. Souza, and H. Garcia-Ruiz. 2019. Genome-wide variation in Potyviruses. Front. Plant Sci. 10:1439. doi: 10.3389/fpls.2019.01439.
   PubMedGoogle Scholar
• Pernezny, K., P.D. Robert, J.F. Murphy, and N.P. Goldberg. 2003. Compendium of pepper diseases. The American Phytopathological Society, St. Paul, MN.
   Google Scholar
• Revers, F., and J.A. García. 2015. Molecular biology of Potyviruses. Adv. Virus Res. 92:101–199. doi: 10.1016/bs.aivir.2014.11.006.
   PubMed Web of Science ®Google Scholar
• Rubio, L., M.A. Ayllon, P. Kong, A. Fernandez, M.L. Polek, J. Guerri, P. Moreno, and B.W. Falk. 2001. Genetic variation of Citrus tristeza virus isolates from California and Spain: Evidence for mixed infections and recombination. J. Virol. 75:8054–8062. doi: 10.1128/jvi.75.17.8054-8062.2001.
   PubMed Web of Science ®Google Scholar
• Schlub, R.L., and L.S. Yudin. 2016. Eggplant, pepper, and tomato production guide for guam-production and ipm practices for solanaceous crops in Guam. 2nd ed. Guam Cooperative Extension, College of Agriculture and Life Sciences, University of Guam, Maniglao.
   Google Scholar
• Shukla, D.D., C.W. Ward, and A.A. Brunt. 1994. The Potyviridae. Centre for Agriculture and Bioscience International, Wallingford, UK.
   Google Scholar
• Spetz, C., A.M. Taboada, S. Darwich, J. Ramsell, L.F. Salazar, and J.P. Valkonen. 2003. Molecular resolution of a complex of potyviruses infecting solanaceous crops at the centre of origin in Peru. J. Gen. Virol. 84(9):2565–2578. doi: 10.1099/vir.0.19208-0.
   PubMedGoogle Scholar
• Stevenson, W.R., R. Loria, G.D. Franc, and D.P. Weingartner, eds. 2001. Compendium of potato diseases. American Phytopathological Society, St Paul, M.N.
   Google Scholar
• Sudheera, Y., G.P. Vishnu Vardhan, M. Hema, M. Krishna Reddy, and P. Sreenivasulu. 2014. Characterization of a potyvirus associated with yellow mosaic disease of jasmine (Jasminum sambac L.) in Andhra Pradesh, India. Vir. Dis. 25(3):394–397. doi: 10.1007/s13337-014-0193-0.
   Google Scholar
• Taiwo, M.A., J.D. Hughes, and A.R. Akomah. 2006. Natural infection of Datura stramonium L. by an unusual strain of Pepper veinal mottle virus Genus Potyvirus in Nigeria. Plant Pathol. J 5(3):401–404. doi: 10.3923/ppj.2006.401.404.
   Google Scholar
• Tamura, K., G. Stecher, P.D. Daniel, F.A. Alan, and S. Kumar. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725–2759. doi: 10.1093/molbev/mst197.
   PubMed Web of Science ®Google Scholar
• Thakur, H., S.K. Jindal, A. Sharma, and A.S. Dhaliwal. 2018. Chilli leaf curl virus disease: A serious threat for Chilli cultivation. J. Plant Dis. Prot 125(3):239–249. doi: 10.1007/s41348-018-0146-8.
   Google Scholar
• Thompson, J.D., D.G. Higgins, and T.J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence weighting, position-specific gap penalties and weight matrix choice. Nuc. Acid. Res. 22:4673–4680. doi: 10.1007/978-1-4020-6754-9_3188.
   PubMed Web of Science ®Google Scholar
• Wylie, S.J., M. Adams, C. Chalam, J. Kreuze, J.J. López-Moya, K. Ohshima, S. Praveen, F. Rabenstein, D. Stenger, A. Wang, et al. 2017. ICTV virus taxonomy profile: Potyviridae. J. Gen Virol. 98(3):352–354. doi: 10.1099/jgv.0.000740.
   PubMed Web of Science ®Google Scholar
• Zhang, S., Z. Zhao, L. Zheng, J. Liu, J. Peng, F. Yan, F. Li, Y. Xie, Z. Cheng, X. Zhou, et al. 2015. Complete genome analysis of a novel recombinant isolate of Pepper veinal mottle virus from mainland China. Vir. J. 12:191–194. doi: 10.1186/s12985-015-0419-9.
   PubMed Web of Science ®Google Scholar