What are the principles that govern life?

References

• Schrödinger E. What is life? Cambridge: Cambridge University Press; 1944.
   Google Scholar
• Lane N . The vital question. London: Profile Books; 2015.
   Google Scholar
• Davies P . The fifth miracle: the search for the origin and meaning of life. New York: Simon & Schuster; 1999.
   Google Scholar
• Cleland CE . The quest for a universal theory of life. Cambridge: Cambridge University Press; 2019.
   Google Scholar
• Massimi M , Breitenbach A . Kant and the laws of nature. Cambridge: Cambridge University Press; 2017.
   Google Scholar
• Cockwell CS . The laws of life. Phys Today. 2017;70:42–48.
   Web of Science ®Google Scholar
• Darwin C . On the origin of species by means of natural selection, or the preservation of favoured races in the struggle for life. London: John Murray; 1859.
   Google Scholar
• Dawkins R . The greatest show on earth: the evidence for evolution. Ealing: Transworld Publishers; 2009.
   Google Scholar
• Shou W , Bergstrom CT , Chakraborty AK , et al. Theory, models and biology. eLIFE. 2015;4:e07158.
   PubMed Web of Science ®Google Scholar
• Crick F . Central dogma of molecular biology. Nature. 1970;227:561–563.
   PubMed Web of Science ®Google Scholar
• Gottdenker P . Francesco Redi and the fly experiments. B Hist Med. 1979;53:575–592.
   PubMed Web of Science ®Google Scholar
• Szent-György A . The Living State. New York: Academic Press; 1972.
   Google Scholar
• Broda E . Ludwig Boltzmann-man-physicist-philosopher. Woodbridge: Ox Bow Press; 1983.
   Google Scholar
• Nelson P . Biological physics, energy, information, life. New York: W.H. Freeman and Company; 2004.
   Google Scholar
• Pascal R , Pross A , Sutherland JD . Towards an evolutionary theory of the origin of life based on kinetics and thermodynamics. Open Biol. 2013;3:130156.
   PubMed Web of Science ®Google Scholar
• Bechtel W , Richardson RC . Vitalism. Routledge encyclopedia of philosophy. London: Routledge; 1998.
   Google Scholar
• Berg JM , Tymoczko JL , Gatto GJ , et al. Biochemistry 9th ed., New York: Freeman and Company; 2019. P.56.
   Google Scholar
• Dill KA , MacCallum JL . The protein-folding problem, 50 years on. Science. 2012;33:1042–1046.
   Google Scholar
• Casjens SR , Hendrix RW . Bacteriophage lambda: Early pioneer and still relevant. Virology 2015;479-480:310–330. doi:10.1016/j.virol.2015.02.010
   PubMed Web of Science ®Google Scholar
• Becker A , Murialdo H , Gold M . Studies on an in vitro system for the packaging and maturation of phage λ DNA. Virology. 1977;78:277–290.
   PubMed Web of Science ®Google Scholar
• Jewett MC , Fritz BR , Timmerman L , et al. In vitro integration of ribosomal RNA synthesis, ribosome assembly, and translation. Mol Syst Biol. 2013;9:678.
   PubMed Web of Science ®Google Scholar
• Klinge S , Woolford JL . Ribosome assembly coming into focus. Nat Rev Mol Cell Biol. 2019;20:116–131.
   PubMed Web of Science ®Google Scholar
• Kressler D , Hurt E , Bassler J. Driving ribosome assembly. Biochim. Biophys. Acta 2010;1803:673–683
   PubMed Web of Science ®Google Scholar
• Keller MA , Zylstra A , Castro C , et al. Conditional iron and pH-dependent activity of a non-enzymatic glycolysis and pentose phosphate pathway. Sci Adv. 2016;2:e1501235.
   PubMed Web of Science ®Google Scholar
• Muchowska K , Varma S , Moran J . Synthesis and breakdown of universal metabolic precursors promoted by iron. Nature. 2019;569:104–107.
   PubMed Web of Science ®Google Scholar
• McGhee GR . Convergent evolution on earth. Cambridge: MIT Press; 2019.
   Google Scholar
• Natarajan C , Hoffmann FG , Weber RE , et al. Predictable convergence in haemoglobin function has unpredictable molecular underpinnings. Science. 2016;354:336–339.
   PubMed Web of Science ®Google Scholar
• Conway Morris S . Life’s solution: inevitable humans in a lonely universe. Cambridge: Cambridge University Press; 2005.
   Google Scholar
• Dembski WA . The design inference: eliminating chance through small probabilities. Cambridge: Cambridge University Press; 1998.
   Google Scholar
• Hoefer C . Causal determinism, stanford encyclopedia of philosophy. Stanford: Stanford University; 2016.
   Google Scholar
• Erwin DH . Evolutionary contingency. Curr Biol. 2006;16:825–826.
   PubMed Web of Science ®Google Scholar
• Gould SJ . Wonderful life: the burguess shale and the nature of history. New York: W.W. Norton and Company; 1989.
   Google Scholar
• Brakefield P . Evo-devo and constraints on selection. Trends Ecol Evol. 2006;21:362–368.
   PubMed Web of Science ®Google Scholar
• Feldman CR , Brodie ED , Pfrender ME . Constraint shapes convergence in tetrodoxin-resistant sodium chanels of snakes. PNAS USA. 2012;109:4556–4561.
   PubMed Web of Science ®Google Scholar
• De Lorenzo V . From the selfish gene to selfish metabolism: revisiting the central dogma. Bioessays. 2014;36:226–235.
   PubMed Web of Science ®Google Scholar
• Shapiro JA . Revisiting the central dogma in the 21st century. Ann NY Acad Sci. 2009;1178:6–28.
   PubMed Web of Science ®Google Scholar
• Shapiro JA . Nothing in evolution makes sense except in the light of genomics: read-write genome evolution as an active biological process. Biology (Basel). 2016;5:1–27.
   Google Scholar
• Halfmann R , Jarosz DF , Jones SK , et al. Prions are a common mechanism for phenotypic inheritance in wild yeasts. Nature. 2012;482:363–368.
   PubMed Web of Science ®Google Scholar
• Koonin E . Does the central dogma still stand? Biol Direct. 2012;7:27.
   PubMed Web of Science ®Google Scholar
• Fedor MJ , Williamson JR . The catalytic diversity of RNAs. Nat Rev Mol Cell Biol. 2005;6:399–412.
   PubMed Web of Science ®Google Scholar
• Gilbert W . Origin of life: the RNA world. Nature. 1986;319:618.
   PubMed Web of Science ®Google Scholar
• Cameron T , Matz LM , De Lay NR . Polynucleotide phosphorylase: not merely an RNase but a pivotal post-transcriptional regulator. PLoS Genet. 2018;14:e1007654.
   PubMed Web of Science ®Google Scholar
• Reimer JM , Eivaskhani M , Harb I , et al. Structures of a dimodular nonribosomal peptide synthetase reveal conformational flexibility. Science. 2019;366:eaaw4388.
   PubMed Web of Science ®Google Scholar
• Monod J . Chance and necessity: an essay on the natural philosophy of modern biology. New York: Alfred A. Knopf; 1971.
   Google Scholar
• Tuisku P , Pernu TK , Annila A . In the light of time. P Roy Soc A. 2009;465:1173–1198.
   Web of Science ®Google Scholar
• Price H . Time’s arrow and archimedes’ point. London: Oxford University Press; 1996.
   Google Scholar
• Futuyma DJ , Kirkpatrick M . Evolution. London: Oxford University Press; 2017.
   Google Scholar
• Dobzhansky T . Nothing in biology makes sense except in the light of evolution. Am Biol Teach. 1973;35:125–129.
   Web of Science ®Google Scholar
• Alexander DE . On the wing: insects, pterosaurs, birds, bats and the evolution of animal flight. Oxford: Oxford University Press; 2015.
   Google Scholar
• Alvarado-Cárdenas LO , Martínez-Meyer E , Feria TP , et al. To converge or not to converge in environmental space: testing for similar environments between analogous succulent plants of North America and Africa. Ann Bot. 2013;111:1125–1138.
   PubMed Web of Science ®Google Scholar
• Courgeon M , Desplan C . Coordination between stochastic and deterministic specification in the Drosophila visual system. Science. 2019;366:eaay6727.
   PubMed Web of Science ®Google Scholar
• Mittelbach G , McGill B . Community ecology. London: Oxford University Press; 2019.
   Google Scholar
• Stewart JE . The direction of evolution: the rise of cooperative organization. BioSystems. 2014;123:27–36.
   PubMed Web of Science ®Google Scholar
• West SA , Griffin AS , Gardner A . Evolutionary explanations for cooperation. Current Biol. 2007;17:R661–R672.
   PubMed Web of Science ®Google Scholar
• Hall-Stoodley L , Costerton JW , Stoodley P . Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol. 2004;2:95–108.
   PubMed Web of Science ®Google Scholar
• Kirchman DL . Processes in microbial ecology. Oxford: Oxford University Press; 2012.
   Google Scholar
• Archibald J . One plus one equals one: symbiosis and the evolution of complex life. Oxford: Oxford University Press; 2014.
   Google Scholar
• López-García P , Eme L , Moreira D . Symbiosis in eukaryotic evolution. J Theor Biol. 2017;434:20–33.
   PubMed Web of Science ®Google Scholar
• Moran NA , Degnan PH , Santos SR , et al. The players of mutualistic symbiosis: insects, bacteria, viruses, and virulence genes. PNAS USA. 2005;102:16919–16926.
   PubMed Web of Science ®Google Scholar
• Oliver KM , Degnan PH , Hunter MS , et al. Bacteriophages encode factors required for protection in a symbiotic mutualism. Science. 2009;325:992–994.
   PubMed Web of Science ®Google Scholar
• Belkaid Y , Hand T . Role of the microbiota in immunity and inflammation. Cell. 2014;157:121–141.
   PubMed Web of Science ®Google Scholar
• Chu C , Murdock MH , Jing D , et al. The microbiota regulate neuronal function and fear extinction learning. Nature. 2019;574:543–548.
   PubMed Web of Science ®Google Scholar
• Gilbert SF , Sapp J , Tauber AI . A symbiotic view of life: we have never been individuals. Q Rev Biol. 2012;87:325–341.
   PubMed Web of Science ®Google Scholar
• Niklas KJ , Newman SA . The origins of multicelular organisms. Evol Dev. 2013;15:41–52.
   PubMed Web of Science ®Google Scholar
• Alberts B , Johnson AD, Lewis J, et al. Molecular biology of the cell. 6th ed. New York, NY: Garland Science; 2014.
   Google Scholar
• Furusawa C , Kaneko K . Origin of multicelular organisms as an inevitable consequence of dynamical systems. Anat Rec. 2002;268:327–342.
   PubMedGoogle Scholar