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Research Paper

Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs

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Pages 202-217 | Received 12 Jun 2017, Accepted 17 Nov 2017, Published online: 27 Mar 2018

References

  • Zhang C, Yin A, Li H, Wang R, Wu G, Shen J, Zhang M, Wang L, Hou Y, Ouyang H, et al. Dietary Modulation of Gut Microbiota Contributes to Alleviation of Both Genetic and Simple Obesity in Children. EBioMedicine. 2015;2:968–84. doi:10.1016/j.ebiom.2015.07.007. PMID:26425705
  • Amato KR. Incorporating the gut microbiota into models of human and non‐human primate ecology and evolution. American journal of physical anthropology. 2016;159:S196–S215. doi:10.1002/ajpa.22908. PMID:26808106
  • McKenney EA, Rodrigo A, Yoder AD. Patterns of gut bacterial colonization in three primate species. PLoS One. 2015;10:e0124618. doi:10.1371/journal.pone.0124618. PMID:25970595
  • David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014;505:559–63. doi:10.1038/nature12820. PMID:24336217
  • Muegge BD, Kuczynski J, Knights D, Clemente JC, González A, Fontana L, Henrissat B, Knight R, Gordon JI. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science. 2011;332:970–4. doi:10.1126/science.1198719. PMID:21596990
  • Ochman H, Lawrence JG, Groisman EA. Lateral gene transfer and the nature of bacterial innovation. Nature. 2000;405:299–304. doi:10.1038/35012500. PMID:10830951
  • Roberfroid MB. Introducing inulin-type fructans. British Journal of Nutrition. 2005;93:S13–S25. doi:10.1079/BJN20041350. PMID:15877886
  • Cook S, Sellin J. Review article: short chain fatty acids in health and disease. Alimentary pharmacology & therapeutics 1998;12:499–507. doi:10.1046/j.1365-2036.1998.00337.x.
  • Argenzio R, Southworth M. Sites of organic acid production and absorption in gastrointestinal tract of the pig. American Journal of Physiology–Legacy Content. 1975;228:454–60.
  • Owens F, Isaacson H. Ruminal microbial yields: factors influencing synthesis and bypass. Federation proceedings. 1977;36:198–202. PMID:838090
  • Aherne SA, O'Brien NM. Dietary flavonols: chemistry, food content, and metabolism. Nutrition. 2002;18:75–81. doi:10.1016/S0899-9007(01)00695-5. PMID:11827770
  • Schlemmer U, Frolich W, Prieto RM, Grases F. Phytate in foods and significance for humans: food sources, intake, processing, bioavailability, protective role and analysis. Mol Nutr Food Res. 2009;53(Suppl 2):S330–75. doi:10.1002/mnfr.200900099. PMID:19774556
  • Bourriaud C, Robins RJ, Martin L, Kozlowski F, Tenailleau E, Cherbut C, Michel C. Lactate is mainly fermented to butyrate by human intestinal microfloras but inter-individual variation is evident. J Appl Microbiol. 2005;99:201–12. doi:10.1111/j.1365-2672.2005.02605.x. PMID:15960680
  • Morrison DJ, Mackay WG, Edwards CA, Preston T, Dodson B, Weaver LT. Butyrate production from oligofructose fermentation by the human faecal flora: what is the contribution of extracellular acetate and lactate?. British Journal of Nutrition. 2006;96:570–7. PMID:16925864
  • Vonk R, Kalivianakis M, Minich D, Bijleveld C, Verkade H. The metabolic importance of unabsorbed dietary lipids in the colon. Scandinavian journal of gastroenterology. 1997;32:65–7. doi:10.1080/00365521.1997.11720722.
  • Kato T, Hayashi Y, Inoue K, Yuasa H. Glycerol absorption by Na+-dependent carrier-mediated transport in the closed loop of the rat small intestine. Biological and Pharmaceutical Bulletin. 2005;28:553–5. doi:10.1248/bpb.28.553. PMID:15744090
  • Fujimoto N, Inoue K, Ohgusu Y, Hayashi Y, Yuasa H. Enhanced uptake of glycerol by butyrate treatment in HCT-15 human colon cancer cell line. Drug metabolism and pharmacokinetics. 2007;22:195–8. doi:10.2133/dmpk.22.195. PMID:17603220
  • Da Silva GP, Mack M, Contiero J. Glycerol: a promising and abundant carbon source for industrial microbiology. Biotechnology advances. 2009;27:30–9. doi:10.1016/j.biotechadv.2008.07.006. PMID:18775486
  • Sauvageot N, Gouffi K, Laplace J-M, Auffray Y. Glycerol metabolism in Lactobacillus collinoides: production of 3-hydroxypropionaldehyde, a precursor of acrolein. International journal of food microbiology. 2000;55:167–70. doi:10.1016/S0168-1605(00)00191-4. PMID:10791738
  • Vollenweider S, Grassi G, König I, Puhan Z. Purification and structural characterization of 3-hydroxypropionaldehyde and its derivatives. Journal of agricultural and food chemistry. 2003;51:3287–93. doi:10.1021/jf021086d. PMID:12744656
  • Axelsson L, Chung T, Dobrogosz W, Lindgren S. Production of a broad spectrum antimicrobial substance by Lactobacillus reuteri. Microbial Ecology in Health and Disease. 1989;2:131–6. doi:10.3109/08910608909140210.
  • Cleusix V, Lacroix C, Vollenweider S, Duboux M, Le Blay G. Inhibitory activity spectrum of reuterin produced by Lactobacillus reuteri against intestinal bacteria. BMC microbiology. 2007;7:1. doi:10.1186/1471-2180-7-101. PMID:17233889
  • Stewart GS, Smith CP. Urea nitrogen salvage mechanisms and their relevance to ruminants, non-ruminants and man. Nutrition research reviews. 2005;18:49–62. doi:10.1079/NRR200498. PMID:19079894
  • Larsen PE, Dai Y. Metabolome of human gut microbiome is predictive of host dysbiosis. Gigascience. 2015;4:42. doi:10.1186/s13742-015-0084-3. PMID:26380076
  • Lozupone C, Faust K, Raes J, Faith JJ, Frank DN, Zaneveld J, Gordon JI, Knight R. Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts. Genome Res. 2012;22:1974–84. doi:10.1101/gr.138198.112. PMID:22665442
  • Sinha S, Chand S, Tripathi P. Microbial degradation of chitin waste for production of chitosanase and food related bioactive compounds. Applied biochemistry and microbiology. 2014;50:125. doi:10.1134/S0003683814020173.
  • Claesson MJ, O'Sullivan O, Wang Q, Nikkila J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS One. 2009;4:e6669. doi:10.1371/journal.pone.0006669. PMID:19693277
  • Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet journal. 2011;17:pp. 10–2. doi:10.14806/ej.17.1.200.
  • Schmieder R, Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 2011;27:863–4. doi:10.1093/bioinformatics/btr026. PMID:21278185
  • Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, et al. QIIME allows analysis of high-throughput community sequencing data. Nature methods. 2010;7:335–6. doi:10.1038/nmeth.f.303. PMID:20383131
  • Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, et al. Metagenomic biomarker discovery and explanation. Genome biology. 2011;12:1. doi:10.1186/gb-2011-12-6-r60.
  • Buchfink B, Xie C, Huson DH. Fast and sensitive protein alignment using DIAMOND. Nature methods. 2015;12:59–60. doi:10.1038/nmeth.3176. PMID:25402007
  • Oksanen J, Kindt R, Legendre P, O'Hara RB, Stevens HH, Oksanen MJ, & Suggests MASS. The vegan package. Community ecology package 2007;10:631–637.
  • Campbell JL, Eisemann JH, Williams CV, Glenn KM. Description of the gastrointestinal tract of five lemur species: Propithecus tattersalli, Propithecus verreauxi coquereli, Varecia variegata, Hapalemur griseus, and Lemur catta. American Journal of Primatology. 2000;52:133–42. doi:10.1002/1098-2345(200011)52:3%3c133::AID-AJP2%3e3.0.CO;2-. PMID:11078027
  • Campbell JL, Williams CV, Eisemann JH. Characterizing gastrointestinal transit time in four lemur species using barium-impregnated polyethylene spheres (BIPS). Am J Primatol. 2004;64:309–21. doi:10.1002/ajp.20080. PMID:15538763
  • Ganzhorn JU. Feeding behavior ofLemur catta andLemur fulvus. International journal of primatology. 1986;7:17–30. doi:10.1007/BF02692307.

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