Advanced search
Publication Cover
Gut Microbes Volume 12, 2020 - Issue 1
Submit an article Journal homepage
2,898
Views
15
CrossRef citations to date
0
Altmetric
Research Article

Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants

Roshonda B. Jonesa Department of Pediatrics, The Saban Research Institute, Children’s Hospital Los Angeles, University of Southern California, Los Angeles, CA, USAORCID Iconhttps://orcid.org/0000-0003-1637-3517View further author information
ORCID Icon,
Paige K. Bergera Department of Pediatrics, The Saban Research Institute, Children’s Hospital Los Angeles, University of Southern California, Los Angeles, CA, USAView further author information
,
Jasmine F. Plowsa Department of Pediatrics, The Saban Research Institute, Children’s Hospital Los Angeles, University of Southern California, Los Angeles, CA, USAView further author information
,
Tanya L. Aldereteb Department of Integrative Physiology, University of Colorado Boulder, Boulder, CO, USAORCID Iconhttps://orcid.org/0000-0002-7751-9543View further author information
ORCID Icon,
Joshua Millsteinc Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USAView further author information
,
Jennifer Fogela Department of Pediatrics, The Saban Research Institute, Children’s Hospital Los Angeles, University of Southern California, Los Angeles, CA, USAView further author information
,
Stanislav N. Iablokovd A. A. Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia;e P.G. Demidov Yaroslavl State University, Yaroslavl, RussiaView further author information
,
Dmitry A. Rodionovd A. A. Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, Russia;f Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USAView further author information
,
Andrei L. Ostermanf Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USAView further author information
,
Lars Bodeg Department of Pediatrics and Larsson-Rosenquist Foundation Mother-Milk-Infant Center of Research Excellence, University of California, San Diego, CA, USAView further author information
&
Michael I. Gorana Department of Pediatrics, The Saban Research Institute, Children’s Hospital Los Angeles, University of Southern California, Los Angeles, CA, USACorrespondence[email protected]
View further author information
 show all
Article: 1813534 | Received 08 May 2020, Accepted 11 Aug 2020, Published online: 04 Sep 2020

References

  • Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. PNAS. 2010;107(26):11971–14. doi:doi:10.1073/pnas.1002601107.
  • Ardissone AN, de la Cruz DM, Davis-Richardson AG, Rechcigl KT, Li N, Drew JC, Murgas-Torrazza R, Sharma R, Hudak ML, Triplett EW. Meconium microbiome analysis identifies bacteria correlated with premature birth. Plos One. 2014;9(3):e90784. doi:doi:10.1371/journal.pone.0090784.
  • Groer MW, Luciano AA, Dishaw LJ, Ashmeade TL, Miller E, Gilbert JA. Development of the preterm infant gut microbiome: a research priority. Microbiome. 2014;2(1):38. doi:doi:10.1186/2049-2618-2-38.
  • Goodrich JK, Waters JL, Poole AC, Sutter J, Koren O, Blekhman R, Beaumont M, Van Treuren W, Knight R, Bell J, et al. Human genetics shape the gut microbiome. Cell. 2014;159(4):789–799. doi:doi:10.1016/j.cell.2014.09.053.
  • Chu DM, Antony KM, Ma J, Prince AL, Showalter L, Moller M, Aagaard KM. The early infant gut microbiome varies in association with a maternal high-fat diet. Genome Med. 2016;8(1):77. doi:doi:10.1186/s13073-016-0330-z.
  • Ma J, Prince AL, Bader D, Hu M, Ganu R, Baquero K, Blundell P, Alan Harris R, Frias AE, Grove KL. High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model. Nat Commun. 2014;5(1):3889. doi:doi:10.1038/ncomms4889.
  • Yasmin F, Tun HM, Konya TB, Guttman DS, Chari RS, Field CJ, Becker AB, Mandhane PJ, Turvey SE, Subbarao P, et al. Cesarean section, formula feeding, and infant antibiotic exposure: separate and combined impacts on gut microbial changes in later infancy. Front Pediatr. 2017;5:200. doi:doi:10.3389/FPED.2017.00200.
  • Guaraldi F, Salvatori G. Effect of breast and formula feeding on gut microbiota shaping in newborns. Front Cell Infect Microbiol. 2012:2. doi:doi:10.3389/fcimb.2012.00094.
  • Rossen LM, Simon AE, Herrick KA. Types of infant formulas consumed in the United States. Clin Pediatr (Phila). 2016;55(3):278–285. doi:doi:10.1177/0009922815591881.
  • Stang J, Hoss K, Story M. Health statements made in infant formula advertisements in pregnancy and early parenting magazines: a content analysis. ICAN. 2010;2(1):16–25. doi:doi:10.1177/1941406409359806.
  • Noble EE, Hsu TM, Jones RB, Fodor AA, Goran MI, Kanoski SE. Early-life sugar consumption affects the rat microbiome independently of obesity. J Nutr. 2017;147(1):20-28. doi:10.3945/jn.116.23881.
  • Martino C, Morton JT, Marotz CA, Thompson LR, Tripathi A, Knight R, Zengler K. A novel sparse compositional technique reveals microbial perturbations. mSystems. 2019;4(1):e00016–19. doi:doi:10.1128/mSystems.00016-19.
  • Rodionov DA, Arzamasov AA, Khoroshkin MS, Iablokov SN, Leyn SA, Peterson SN, Novichkov PS, Osterman AL. Micronutrient requirements and sharing capabilities of the human gut microbiome. Front Microbiol. 2019:10. doi:doi:10.3389/fmicb.2019.01316.
  • Sharma V, Rodionov DA, Leyn SA, Tran D, Iablokov SN, Ding H, Peterson DA, Osterman AL, Peterson SN. B-vitamin sharing promotes stability of gut microbial communities. Front Microbiol. 2019:10. doi:doi:10.3389/fmicb.2019.01485.
  • Leyn SA, Maezato Y, Romine MF, Rodionov DA. Genomic reconstruction of carbohydrate utilization capacities in microbial-mat derived consortia. Front Microbiol. 2017:8. doi:doi:10.3389/fmicb.2017.01304.
  • Arzamasov AA, van Sinderen D, Rodionov DA. Comparative genomics reveals the regulatory complexity of bifidobacterial arabinose and arabino-oligosaccharide utilization. Front Microbiol. 2018:9. doi:doi:10.3389/fmicb.2018.00776.
  • Bouvier JT, Sernova NV, Ghasempur S, Rodionova IA, Vetting MW, Al-Obaidi NF, Almo SC, Gerlt JA, Rodionov DA. Novel metabolic pathways and regulons for hexuronate utilization in proteobacteria. J Bacteriol. 2019;201:2. doi:doi:10.1128/JB.00431-18.
  • Ye Y, Doak TG, Parsimony A. Approach to biological pathway reconstruction/inference for genomes and metagenomes. PLoS Comput Biol. 2009;5(8):e1000465. doi:doi:10.1371/journal.pcbi.1000465.
  • Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013;31(9):814–821. doi:doi:10.1038/nbt.2676.
  • Louis P, Flint HJ. Formation of propionate and butyrate by the human colonic microbiota. Environ Microbiol. 2017;19(1):29–41. doi:doi:10.1111/1462-2920.13589.
  • Tidjani Alou M, Lagier J-C, Raoult D. Diet influence on the gut microbiota and dysbiosis related to nutritional disorders. Hum Microbiome J. 2016;1:3–11. doi:doi:10.1016/j.humic.2016.09.001.
  • Kittelmann S, Seedorf H, Walters WA, Clemente JC, Knight R, Gordon JI, Janssen PH. Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities. Plos One. 2013;8(2):e47879. doi:doi:10.1371/journal.pone.0047879.
  • Cho I, Yamanishi S, Cox L, Methé BA, Zavadil J, Li K, Gao Z, Mahana D, Raju K, Teitler I. Antibiotics in early life alter the murine colonic microbiome and adiposity. Nature. 2012;488(7413):621–626. doi:doi:10.1038/nature11400.
  • Nirmalkar K, Murugesan S, Pizano-Zárate ML, Villalobos-Flores L, García-González C, Morales-Hernández R, Nuñez-Hernández J, Hernández-Quiroz F, Romero-Figueroa M, Hernández-Guerrero C, et al. Gut microbiota and endothelial dysfunction markers in obese mexican children and adolescents. Nutrients. 2018;10(12):2009. doi:doi:10.3390/nu10122009.
  • Murugesan S, Ulloa-Martínez M, Martínez-Rojano H, Galván-Rodríguez FM, Miranda-Brito C, Romano MC, Piña-Escobedo A, Pizano-Zárate ML, Hoyo-Vadillo C, García-Mena J, et al. Study of the diversity and short-chain fatty acids production by the bacterial community in overweight and obese Mexican children. Eur J Clin Microbiol Infect Dis. 2015;34(7):1337–1346. doi:doi:10.1007/s10096-015-2355-4.
  • Bode L. Human milk oligosaccharides: every baby needs a sugar mama. Glycobiology. 2012;22(9):1147–1162. doi:doi:10.1093/glycob/cws074.
  • Wu F, Guo X, Zhang J, Zhang M, Ou Z, Peng Y. Phascolarctobacterium faecium abundant colonization in human gastrointestinal tract. Exp Ther Med. 2017;14(4):3122–3126. doi:doi:10.3892/etm.2017.4878.
  • Azad MB, Vehling L, Chan D, Klopp A, Nickel NC, McGavock JM, Becker AB, Mandhane PJ, Turvey SE, Moraes TJ, et al. Infant feeding and weight gain: separating breast milk from breastfeeding and formula from food. Pediatrics. 2018;142(4):4. doi:doi:10.1542/peds.2018-1092.
  • Klopp A, Vehling L, Becker AB, Subbarao P, Mandhane PJ, Turvey SE, Lefebvre DL, Sears MR, Azad MB, Daley D, et al. Modes of infant feeding and the risk of childhood asthma: a prospective birth cohort study. J Pediatr. 2017;190(192–199):e2. doi:doi:10.1016/j.jpeds.2017.07.012.
  • Gehrig JL, Venkatesh S, Chang H-W, Hibberd MC, Kung VL, Cheng J, Chen RY, Subramanian S, Cowardin CA, Meier MF, et al. Effects of microbiota-directed foods in gnotobiotic animals and undernourished children. Science. 2019;365(6449):6449. doi:doi:10.1126/science.aau4732.
  • Berger PK, Plows JF, Jones RB, Pollock NK, Alderete TL, Ryoo JH, Goran MI. Maternal blood pressure mediates the association between maternal obesity and infant weight gain in early postpartum. Pediatr Obes. 2019;14(11):e12560. doi:10.1111/ijpo.12560.
  • Flores GE, Henley JB, Fierer N, Direct A. PCR approach to accelerate analyses of human-associated microbial communities. Plos One. 2012;7(9):e44563. doi:doi:10.1371/journal.pone.0044563.
  • Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, et al. A communal catalogue reveals Earth’s multiscale microbial diversity. Nature. 2017;551(7681):457–463. doi:doi:10.1038/nature24621.
  • Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJA, Holmes SP. DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods. 2016;13(7):581–583. doi:doi:10.1038/nmeth.3869.
  • Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR. The RDP (ribosomal database project). Nucleic Acids Res. 1997;25(1):109–111. doi:10.1093/nar/25.1.109.
  • Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, Edwards RA, Gerdes S, Parrello B, Shukla M, et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 2014;42(D1):D206–D214. doi:doi:10.1093/nar/gkt1226.
  • Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett WS, Huttenhower C. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12(6):R60. doi:doi:10.1186/gb-2011-12-6-r60.
  • McCafferty J, Mühlbauer M, Gharaibeh RZ, Arthur JC, Perez-Chanona E, Sha W, Jobin C, Fodor AA. Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model. Isme J. 2013;7(11):2116–2125. doi:doi:10.1038/ismej.2013.106.
  • Millstein J, Volfson D. Computationally efficient permutation-based confidence interval estimation for tail-area FDR. Front Genet. 2013;4:179. doi:doi:10.3389/fgene.2013.00179.
  • R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing Vienna Austria. 2016; 0:{ISBN} 3-900051-07-0. doi:10.1038/sj.hdy.6800737.
  • Wickham H. Ggplot2: elegant graphics for data analysis. New York (NY): Springer; 2016.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.