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Original Articles

Development of RAPD‐SCAR and RAPD‐generated PCR‐RFLP markers for identification of four Anguilla eel species

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Pages 179-186 | Received 01 May 2009, Accepted 01 Jun 2009, Published online: 15 Nov 2010

References

  • Adinolfi , B , Chicca , A , Martinotti , E , Breschi , MC and Nieri , P . 2007 . Sequence characterized amplified region (SCAR) analysis on DNA from the three medicinal Echinacea species . Fitoterapia , 78 : 43 – 43 .
  • Albert , V , Jónsson , B and Bernatchez , L . 2007 . Natural hybrids in Atlantic eels (Anguilla anguilla, A. rostrata): evidence for successful reproduction and fluctuating abundance in space and time . Mol Ecol , 15 : 1903 – 1916 .
  • Aoyama , J , Watanabe , S , Nishida , M and Tsukamoto , K . 2000 . Discrimination of catadromous eels of genus Anguilla using polymerase chain reaction‐restriction fragment length polymorphism analysis of the mitochondrial 16S ribosomal RNA domain . Trans Am Fish Soc , 129 : 873 – 878 .
  • Araneda , C , Neira , R and Iturra , P . 2005 . Identification of a dominant SCAR marker associated with colour traits Coho salmon (Oncorhynchus kisutch) . Aquaculture , 247 : 67 – 73 .
  • Asahida , T , Kobayashi , T , Saitoh , K and Nakayama , I . 1996 . Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea . Fisheries Sci , 62 : 727 – 730 .
  • Avise , JC , Helfman , GS , Saunders , NC and Hales , LS . 1986 . Mitochondrial DNA differentiation in North Atlantic eels: population genetic consequences of an unusual life history pattern . Proc Natl Acad Sci USA , 83 : 4350 – 4354 .
  • Ballard , JWO and Whitlock , MC . 2004 . The incomplete natural history of mitochondria . Mol Ecol , 13 : 729 – 744 .
  • Bardakci , F and Skibinski , DOF . 1994 . Application of the RAPD technique in tilapia fish species and subspecies identification . Heredity , 73 : 117 – 123 .
  • Blasko , K , Kaplan , SA , Higgins , KG , Wolfson , R and Sears , BB . 1998 . Variation in copy number of a 24‐base pair tandem repeat in the chloroplast DNA of Oenothera hookeri strain Johansen . Curr Genet , 14 : 287 – 292 .
  • Buchmayer , H , Rumpold , H and Mannhalter , C . 1996 . Identification of a variable number tandem repeat region in the human T cell receptor alpha‐delta (TCRAD) locus . Hum Genet , 98 : 333 – 335 .
  • Caccone , A , Allegrucci , G , Fortunato , C and Sbordoni , V . 1997 . Genetic differentiation within the European Sea Bass (D. labrax) as revealed by RAPD‐PCR . J Hered , 88 : 316 – 324 .
  • Callejas , C and Ochabdo , MD . 1998 . Identification of Spanish barbell species using the RAPD technique . J Fish Biol , 53 : 208 – 215 .
  • Castle , PHJ and Williamson , GR . 1974 . On the validity of the freshwater eel species Anguilla ancestralis from Celebes . Copeia , 2 : 569 – 570 .
  • Dnyaneshwar , W , Preeti , C , Kalpana , J and Bhushan , P . 2006 . Development and application of RAPD‐SCAR marker for identification of Phyllanthus emblica LINN . Biol Pharm Bull , 29 : 2313 – 2316 .
  • Ege , V . 1939 . A revision of the genus Anguilla Shaw, a systematic, phylogenetic and geographical study . Dana‐Report Carlsberg Foundation , 16 : 1 – 256 .
  • Frankowski , J , Jennerich , S , Schaarschmidt , T , Ubl , C , Jürss , K and Bastrop , R . 2008 . Validation of the occurrence of the American eel Anguilla rostrata (Le Sueur, 1817) in free‐draining European inland waters . Biol Invasions , DOI 10.1007/s10530–008–9337–8
  • Gagnaire , PA , Tsukamoto , K , Aoyama , J , Minegishi , Y , Valade , P and Berrebi , P . 2007 . RELP and semi‐multiplex PCR‐based identification of four eel species from the south‐western Indian Ocean region . J Fish Biol , 71 : 279 – 287 .
  • Garner , KJ and Slavicek , JK . 1996 . Identification and characterization of a RAPD‐PCR marker for distinguishing Asian and North American gypsy moths . Insect Mol Biol , 5 : 81 – 91 .
  • Itoi , S , Nakaya , M , Kaneko , G , Kondo , H , Sezaki , K and Watabe , S . 2005 . Rapid identification of eels Anguilla japonica by polymerase chain reaction with single nucleotide polymorphism‐based specific probes . Fisheries Sci , 71 : 1356 – 1364 .
  • Kang , EJ , Kim , KS , Park , SR and Sohn , SG . 2000 . Species identification of Japanese, American, and European eel elvers, and changes in morphometric characters according to growth . Korean J Ichthyol , 12 : 244 – 249 .
  • Kang , HW , Park , DS , Go , SJ and Eun , MY . 2002 . Fingerprinting of diverse genomes using PCR with universal rice primers generated from repetitive sequence of Korean weedy rice . Mol Cells , 13 : 281 – 287 .
  • Lecomte‐Finiger , R . 2003 . The genus Anguilla Schrank, 1798: current state of knowledge and questions . Rev Fish Biol Fisher , 13 : 265 – 279 .
  • Lehmann , D , Hettwer , H and Taraschewski , H . 2000 . PAPD‐PCR investigations of systematic relationships among four species of eels (Teleostei: Anguillidae), particularly Anguilla anguilla and A . rostrata. Mar Biol , 137 : 195 – 204 .
  • Lin , YS , Poh , YP , Lin , SM and Tzeng , CS . 2002 . Molecular techniques to identify freshwater eels: RFLP analyses of PCR‐amplified DNA fragments and allele‐specific PCR from mitochondrial DNA . Zool Stud , 41 : 421 – 430 .
  • Miller , ML and Tsukamoto , K . 2004 . An introduction to the Leptocephali: Biology and Identification , Tokyo : Ocean Research Institute, The University of Tokyo .
  • Minegishi , Y , Aoyama , J , Inoue , JG , Miya , M , Nishida , M and Tsukamoto , K . 2005 . Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences . Mol Phylogenet Evol , 34 : 134 – 146 .
  • Mullis , KB and Faloona , FA . 1987 . Specific synthesis of DNA in vitro via a polymerase‐catalysed chain reaction . Method Enzymol , 155 : 335 – 350 .
  • Nieddu , M , Pichiri , G , Coni , P , Salvadori , S , Deiana , AM and Mezzanotte , RA . 1998 . Comparative analysis of European and American eel (Anguilla anguilla and Anguilla rostrata) genomic DNA: 5s rDNA polymorphism permits the distinction between the two populations . Genome , 41 : 728 – 732 .
  • Pichiri , G. , Nieddu , M , Manconi , S , Casu , C , Coni , P , Salvadori , S and Mezzanotte , R . 2006 . Isolation and characterization of two different 5S rDNA in Anguilla anguilla and Anguilla rostrata: possible markers of evolutionary divergence . Mol Ecol Notes , 6 : 638 – 641 .
  • Pourcel , C , Visca , P , Afshar , B , D'Arezzo , S , Vergnaud , G and Fry , NK . 2007 . Identification of variable‐number tandem‐repeat (VNTR) sequences in Legionella pheumophila and development of an optimized multiple‐locus VNTR analysis typing scheme . J Clin Microbiol , 45 : 1190 – 1199 .
  • Puterka , GJ , Black , WC , Steiner , WM and Burton , RL . 1993 . Genetic variation and phylogenetic relationships among world collections of the Russian wheat aphid, Diuraphis noxia (Mordvilko), inferred from allozyme and RAPD‐PCR markers . Heredity , 70 : 604 – 608 .
  • Rehbein , H , Sotelo , CG , Perez‐Martin , R , Chapela‐Garrido , MJ , Hold , GL , Russell , VJ , Pryde , SE , Santos , AT , Rosa , C , Quinteiro , J and Rey‐Mendez , M . 2002 . Differentiation of raw or processed eel by PCR‐based techniques: restriction fragment length polymorphism analysis (RFLP) and single strand conformation polymorphism analysis (SSCP) . Eur Food Res Technol , 214 : 171 – 177 .
  • Ruzainah , A , Siti Azizah , MN , Patimah , I and Amirrudin , A . 2003 . RAPD fingerprinting of the eel‐loaches Pangio filinaris and Pangio piperata: preliminary evaluation . Aquac Res , 34 : 959 – 965 .
  • Smith , JP , Benson , PG and McVeagh , SM . 1997 . A comparison of three genetics methods used for stock discrimination of orange roughy, Hoplostethus atlanticus: allozymes, mitochondrial DNA and random amplified polymorphism DNA . Fish Bull , 95 : 800 – 811 .
  • Tesch , FW . 1977 . “ The Eel ” . In Biology and management of anguillid eels , 434 London : Chapman and Hall .
  • Tesch , FW . 1999 . “ Der Aal ” . In Biologie und Fischerei , Hamberg : Verlag Paul Parey .
  • Vergnaud , G and Pourcel , C . 2006 . “ Multiple locus VNTR (variable number of tandem repeat) analysis (MLVA) ” . In Molecular identification, systematic and population structure of prokaryotes , Edited by: Stackerbrandt , E . 83 – 104 . Berlin, , Germany : Springer‐Verlag .
  • Watanabe , S , Minegishi , Y , Yoshinaga , T , Aoyama , J and Tsukamoto , K . 2004 . A quick method for species identification of Japanese eel (Anguilla japonica) using real‐time PCR: an onboard application for use during sampling surveys . Mar Biotechnol , 6 : 566 – 574 .
  • Williams , JGK , Kubelik , AR , Livak , KJ , Rafalski , JA and Tingey , SV . 1990 . DNA polymorphisms amplified by arbitrary primers are useful as genetic markers . Nucleic Acids Res , 18 : 6531 – 6535 .
  • To whom correspondence should be addressed. Tel: +82–51 ‐720–2451; Fax: +82–51 ‐720–2456. E‐mail: [email protected]

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