The association of haplotypes in IGFBP-3 gene promoter region and tissue expressions in three pig breeds

References

• Barrett JC, Fry B, Maller J, Daly MJ. 2005. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics. 21:263–265. doi: 10.1093/bioinformatics/bth457
   PubMed Web of Science ®Google Scholar
• Botstein D, White RL, Skolnick M, Davis RW. 1980. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet. 32:314–331.
   PubMed Web of Science ®Google Scholar
• Bregman A, Avraham-Kelbert M, Barkai O, Duek L, Guterman A, Choder M. 2011. Promoter elements regulate cytoplasmic mRNA decay. Cell. 147:1473–1483. doi: 10.1016/j.cell.2011.12.005
   PubMed Web of Science ®Google Scholar
• Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, Frisch M, Bayerlein M, Werner T. 2005. Matlnspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics. 21:2933–2942. doi: 10.1093/bioinformatics/bti473
   PubMed Web of Science ®Google Scholar
• Chen A, Hao LL, Fang XB, Lu K, Liu SC, Zhang YL. 2014. Polymorphism analysis of IGFBP-5 gene exon 1 in Tibet Mini-pig and Junmu No. 1 White pig. Genet Mol Res. 13:1643–1649. doi: 10.4238/2014.March.12.17
   PubMed Web of Science ®Google Scholar
• Clemmons DR. 1997. Insulin-like growth factor binding proteins and their role in controlling IGF actions. Cytokine Growth Factor Rev. 8:45–62. doi: 10.1016/S1359-6101(96)00053-6
   PubMedGoogle Scholar
• Clutter AC, Spicer LJ, Woltmann MD, Grimes RW, Hammond JM, Buchanan DS. 1995. Plasma growth hormone, insulin-like growth factor I, and insulin-like growth factor binding proteins in pigs with divergent genetic merit for postweaning average daily gain. J Anim Sci. 73:1776–1783. doi: 10.2527/1995.7361776x
   PubMed Web of Science ®Google Scholar
• Fang X, Liu S, Cheng Y, Li S, Wu Q, Su D, Lu C, Yu H, Hao L. 2015. SNPs in the 5′ terminal-region of IGFBP6 gene and its linkage with pig body size. Anim Cell Syst. 19:417–424. doi: 10.1080/19768354.2015.1108227
   Web of Science ®Google Scholar
• Gao Y, Zhang Y, Zhang S, Li F, Wang S, Dai L, Jiang H, Xiao S, Liu D, Sun B, et al. 2011. Association of A-FABP gene polymorphism in intron 1 with meat quality traits in Junmu No. 1 white swine. Gene. 487:170–173. doi: 10.1016/j.gene.2011.07.005
   PubMed Web of Science ®Google Scholar
• Gaut BS, Long AD. 2003. The lowdown on linkage disequilibrium. Plant Cell. 15:1502–1506. doi: 10.1105/tpc.150730
   PubMed Web of Science ®Google Scholar
• Gervais C, Mauvieux L, Perrusson N, Helias C, Struski S, Leymarie V, Lioure B, Lessard M. 2005. A new translocation t(9;11)(q34;p15) fuses NUP98 to a novel homeobox partner gene, PRRX2, in a therapy-related acute myeloid leukemia. Leukemia. 19:145–148.
   PubMed Web of Science ®Google Scholar
• Grohmann M, Foulstone E, Welsh G, Holly J, Shield J, Crowne E, Stewart C. 2005. Isolation and validation of human prepubertal skeletal muscle cells: maturation and metabolic effects of IGF-I, IGFBP-3 and TNF alpha. J Physiol. 568:229–242. doi: 10.1113/jphysiol.2005.093906
   PubMed Web of Science ®Google Scholar
• Gu Y-R, Zhang K, Li M-Z, Li X-W, Zhu L, Wang JY, Chen L. 2009. Developmental expression changes of Insulin-Like Growth Factors (IGFs) system genes in longissimus dorsi muscle of two pig breeds. Yi chuan = Hereditas/Zhongguo yi chuan xue hui bian ji. 31:837–843. doi: 10.3724/SP.J.1005.2009.00837
   PubMedGoogle Scholar
• Hao LL, Yu H, Zhang Y, Sun SC, Liu SC, Zeng YZ, Ai YX, Jiang HZ. 2011. Single nucleotide polymorphism analysis of exons 3 and 4 of IGF-1 gene in pigs. Genet Mol Res. 10:1689–1695. doi: 10.4238/vol10-3gmr1328
   PubMed Web of Science ®Google Scholar
• Hjortebjerg R, Frystyk J. 2013. Determination of IGFs and their binding proteins. Best Pract Res Clin Endocrinol Metab. 27:771–781. doi: 10.1016/j.beem.2013.08.010
   PubMed Web of Science ®Google Scholar
• Juszczuk-Kubiak E, Starzynski RR, Wicinska K, Flisikowski K. 2012. Promoter variant-dependent mRNA expression of the MEF2A in longissimus dorsi muscle in cattle. DNA Cell Biol. 31:1131–1135. doi: 10.1089/dna.2011.1533
   PubMed Web of Science ®Google Scholar
• de Koning DJ, Harlizius B, Rattink AP, Groenen MAM, Brascamp EW, van Arendonk JAM. 2001. Detection and characterization of quantitative trait loci for meat quality traits in pigs. J Anim Sci. 79:2812–2819. doi: 10.2527/2001.79112812x
   PubMed Web of Science ®Google Scholar
• Lahbib-Mansais Y, Yerle M, Pinton P, Gellin J. 1996. Chromosomal localization of homeobox genes and associated markers on porcine chromosomes 3, 5, 12, 15, 16 and 18: comparative mapping study with human and mouse. Mamm Genome. 7:174–179. doi: 10.1007/s003359900049
   PubMed Web of Science ®Google Scholar
• Lee C, Chung Y, Kimi JH. 2003. Quantitative trait loci mapping for fatty acid contents in the backfat on porcine chromosomes 1, 13, and 18. Mol Cells. 15:62–67.
   PubMed Web of Science ®Google Scholar
• Li J, Liu Y, Zhang JW, Wei H, Yang L. 2006. Characterization of hepatic drug-metabolizing activities of Bama miniature pigs (Sus scrofa domestica): Comparison with human enzyme analogs. Comp Med. 56:286–290.
   PubMed Web of Science ®Google Scholar
• Liu D, Zhang Y, Du Y, Yang G, Zhang X. 2007. Identification and characterization of single nucleotide polymorphisms in 6 growth-correlated genes in porcine by denaturing high performance liquid chromatography. DNA Seq. 18:220–227. doi: 10.1080/10425170601150839
   PubMed Web of Science ®Google Scholar
• Locatelli V, Bianchi VE. 2014. Effect of GH/IGF-1 on bone metabolism and osteoporsosis. Int J Endocrinol. 2014:235060. Available from: https://www.hindawi.com/journals/ije/2014/235060/ doi: 10.1155/2014/235060
   PubMed Web of Science ®Google Scholar
• Mathelier A, Zhao X, Zhang AW, Parcy F, Worsley-Hunt R, Arenillas DJ, Buchman S, Chen CY, Chou A, Ienasescu H, et al. 2014. JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles. Nucleic Acids Res. 42:D142–D147. doi: 10.1093/nar/gkt997
   PubMed Web of Science ®Google Scholar
• Mathews LS, Hammer RE, Behringer RR, D’Ercole AJ, Bell GI, Brinster RL, Palmiter RD. 1988. Growth enhancement of transgenic mice expressing human insulin-like growth factor I. Endocrinology. 123:2827–2833. doi: 10.1210/endo-123-6-2827
   PubMed Web of Science ®Google Scholar
• Modric T, Silha JV, Shi ZD, Gui YT, Suwanichkul A, Durham SK, Powell DR, Murphy LJ. 2001. Phenotypic manifestations of insulin-like growth factor-binding protein-3 overexpression in transgenic mice. Endocrinology. 142:1958–1967.
   PubMed Web of Science ®Google Scholar
• Moses AC, Nissley SP, Short PA, Rechler MM, White RM, Knight AB, Higa OZ. 1980. Increased levels of multiplication-stimulating activity, an insulin-like growth factor, in fetal rat serum. Proc Natl Acad Sci USA. 77:3649–3653. doi: 10.1073/pnas.77.6.3649
   PubMed Web of Science ®Google Scholar
• Nawathe AR, Christian M, Kim SH, Johnson M, Savvidou MD, Terzidou V. 2016. Insulin-like growth factor axis in pregnancies affected by fetal growth disorders. Clin Epigenet. 8:11. Available from: http://clinicalepigeneticsjournal.biomedcentral.com/articles/10.1186/s13148-016-0178-5 doi: 10.1186/s13148-016-0178-5
   PubMed Web of Science ®Google Scholar
• Nei M. 1973. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA. 70:3321–3323. doi: 10.1073/pnas.70.12.3321
   PubMed Web of Science ®Google Scholar
• Ning Y, Schuller AGP, Bradshaw S, Rotwein P, Ludwig T, Frystyk J, Pintar JE. 2006. Diminished growth and enhanced glucose metabolism in triple knockout mice containing mutations of insulin-like growth factor binding protein-3,-4, and-5. Mol Endocrinol. 20:2173–2186. doi: 10.1210/me.2005-0196
   PubMed Web of Science ®Google Scholar
• Popowski M, Templeton TD, Lee BK, Rhee C, Li H, Miner C, Dekker JD, Orlanski S, Bergman Y, Iyer VR, et al. 2014. Bright/Arid3A acts as a barrier to somatic cell reprogramming through direct regulation of Oct4, Sox2, and Nanog. Stem Cell Reports. 2:26–35.
   Google Scholar
• Shan L, Wu Q, Li Y, Shang H, Guo K, Wu J, Wei H, Zhao J, Yu J, Li MH. 2014. Transcriptome profiling identifies differentially expressed genes in postnatal developing pituitary gland of miniature pig. DNA Res. 21:207–216. doi: 10.1093/dnares/dst051
   PubMed Web of Science ®Google Scholar
• Simianer H, Koehn F. 2010. Genetic management of the Gottingen Minipig population. J Pharmacol Toxicol Methods. 62:221–226. doi: 10.1016/j.vascn.2010.05.004
   PubMed Web of Science ®Google Scholar
• Susa T, Ishikawa A, Kato T, Nakayama M, Kato Y. 2009. Molecular cloning of paired related homeobox 2 (Prx2) as a novel pituitary transcription factor. J Reprod Dev. 55:502–511. doi: 10.1262/jrd.20256
   PubMed Web of Science ®Google Scholar
• Tian YG, Yue M, Gu Y, Gu WW, Wang YJ. 2014. Single-nucleotide polymorphism analysis of GH, GHR, and IGF-1 genes in minipigs. Braz J Med Biol Res. 47:753–758. doi: 10.1590/1414-431X20143945
   PubMed Web of Science ®Google Scholar
• Wang W, Meng Q, Hu X, Li N. 2009. Genetic variation and association of insulin-like growth factor binding protein-3 with performance in swine. Biochem Genet. 47:315–321. doi: 10.1007/s10528-009-9230-x
   PubMed Web of Science ®Google Scholar
• Webb CF, Bryant J, Popowski M, Allred L, Kim D, Harriss J, Schmidt C, Miner CA, Rose K, Cheng HL, et al. 2011. The ARID family transcription factor bright is required for both hematopoietic stem cell and B lineage development. Mol Cell Biol. 31:1041–1053. doi: 10.1128/MCB.01448-10
   PubMed Web of Science ®Google Scholar
• Ye RS, Li M, Qi QE, Cheng X, Chen T, Li CY, Wang SB, Shu G, Wang LN, Zhu XT, et al. 2015. Comparative anterior pituitary miRNA and mRNA expression profiles of Bama minipigs and landrace pigs reveal potential molecular network involved in animal postnatal growth. PLoS ONE. 10:e0131987.
   Google Scholar
• Yoshida S, Ueharu H, Higuchi M, Horiguchi K, Nishimura N, Shibuya S, Mitsuishi H, Kato T, Kato Y. 2014. Molecular cloning of rat and porcine retina-derived POU domain factor 1 (POU6F2) from a pituitary cDNA library. J Reprod Dev. 60:288–294. doi: 10.1262/jrd.2014-023
   PubMed Web of Science ®Google Scholar
• Zhang YH, Dai LS, Ma TH, Wang SZ, Guo J, Li FJ, Zhang SM, Sun BX, Liu DF, Gao Y, Zhang JB. 2013. Association of T1740C polymorphism of L-FABP with meat quality traits in Junmu No. 1 white swine. Genet Mol Res. 12:235–241. doi: 10.4238/2013.January.30.9
   PubMed Web of Science ®Google Scholar