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Original Article

The microbial abundance dynamics of the paediatric oral cavity before and after sleep

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Article: 1741254 | Received 07 Aug 2019, Accepted 16 Feb 2020, Published online: 30 Mar 2020

References

  • Aas JA, Paster BJ, Stokes LN, et al. Defining the normal bacterial flora of the oral cavity. J Clin Microbiol. 2005;43(11):5721–12. PubMed PMID: 16272510; PubMed Central PMCID: PMC1287824.
  • Xu X, He J, Xue J, et al. Oral cavity contains distinct niches with dynamic microbial communities. Environ Microbiol. 2014. n/a-n/a. DOI:10.1111/1462-2920.12502.
  • Wade WG. The oral microbiome in health and disease. Pharmacol Res. 2013 PubMed PMID: 23201354;69(1):137–143.
  • Simon-Soro A, Tomas I, Cabrera-Rubio R, et al. Microbial geography of the oral cavity. J Dent Res. 2013;92(7):616–621. PubMed PMID: 23674263.
  • Lazarevic V, Whiteson K, Hernandez D, et al. Study of inter- and intra-individual variations in the salivary microbiota. BMC Genomics. 2010;11:523. Epub 2010/10/06. PubMed PMID: 20920195; PubMed Central PMCID: PMCPMC2997015.
  • David LA, Materna AC, Friedman J, et al. Host lifestyle affects human microbiota on daily timescales. Genome Biol. 2014;15(7):R89. Epub 2014/08/26. PubMed PMID: 25146375; PubMed Central PMCID: PMCPMC4405912.
  • Abeles SR, Robles-Sikisaka R, Ly M, et al. Human oral viruses are personal, persistent and gender-consistent. Isme J. 2014;8(9):1753–1767. Epub 2014/03/22. PubMed PMID: 24646696; PubMed Central PMCID: PMCPMC4139723.
  • Cameron SJ, Huws SA, Hegarty MJ, et al. The human salivary microbiome exhibits temporal stability in bacterial diversity. FEMS Microbiol Ecol. 2015;91(9):fiv091. Epub 2015/07/25. PubMed PMID: 26207044.
  • Costello EK, Lauber CL, Hamady M, et al. Bacterial community variation in human body habitats across space and time. Science. 2009;326(5960):1694–1697. Epub 2009/ 11/07. PubMed PMID: 19892944; PubMed Central PMCID: PMCPMC3602444.
  • Takayasu L, Suda W, Takanashi K, et al. Circadian oscillations of microbial and functional composition in the human salivary microbiome. DNA Res. 2017;24(3):261–270. Epub 2017/03/25. PubMed PMID: 28338745; PubMed Central PMCID: PMCPMC5499806.
  • Humphrey SP, Williamson RT. A review of saliva: normal composition, flow, and function. J Prosthet Dent. 2001;85(2):162–169. PubMed PMID: 11208206.
  • Schneyer LH, Pigman W, Hanahan L, et al. Rate of flow of human parotid, sublingual, and submaxillary secretions during sleep. J Dent Res. 1956;35(1):109–114. PubMed PMID: 13286394.
  • Choi JE, Waddell JN, Lyons KM, et al. Intraoral pH and temperature during sleep with and without mouth breathing. J Oral Rehabil. 2016;43(5):356–363. PubMed PMID: WOS:000374339900005.
  • Proctor DM, Fukuyama JA, Loomer PM, et al. A spatial gradient of bacterial diversity in the human oral cavity shaped by salivary flow. Nat Commun. 2018;9(1):681. PubMed PMID: 29445174; PubMed Central PMCID: PMC5813034.
  • Zhou J, Jiang N, Wang Z, et al. Influences of pH and iron concentration on the salivary microbiome in individual humans with and without caries. Appl Environ Microbiol. 2017; 83(4). Epub 2016/ 12/13. PubMed PMID: 27940544; PubMed Central PMCID: PMCPMC5288818. doi:10.1128/AEM.02412-16.
  • Marie D, Brussaard CPD, Thyrhaug R, et al. Enumeration of marine viruses in culture and natural samples by flow cytometry. Appl Environ Microbiol. 1999;65(1):45–52. PubMed PMID: 9872758; PubMed Central PMCID: PMC90981.
  • Brussaard CP. Optimization of procedures for counting viruses by flow cytometry. Appl Environ Microbiol. 2004;70(3):1506–1513. PubMed PMID: 15006772; PubMed Central PMCID: PMC368280.
  • Carlson-Jones JA, Paterson JS, Newton K, et al. Enumerating virus-like particles and bacterial populations in the sinuses of chronic rhinosinusitis patients using flow cytometry. PloS One. 2016;11(5):e0155003. PubMed PMID: 27171169.
  • van Gelder S, Rohrig N, Schattenberg F, et al. A cytometric approach to follow variation and dynamics of the salivary microbiota. Methods. 2018;134–135:67–79. Epub 2017/ 08/27. PubMed PMID: 28842259.
  • de la Cruz Pena MJ, Martinez-Hernandez F, Garcia-Heredia I, et al. Deciphering the human virome with single-virus genomics and metagenomics. Viruses. 2018;10(3). Epub 2018/03/07. PubMed PMID: 29509721; PubMed Central PMCID: PMCPMC5869506. DOI:10.3390/v10030113.
  • Paterson JS, Nayar S, Mitchell JG, et al. A local upwelling controls viral and microbial community structure in South Australian continental shelf waters. Estuar Coast Shelf S. 2012;96:197–208. PubMed PMID: WOS:000300484500021.
  • Gasol JM, Del Giorgio PA. Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities. Sci Mar. 2000;64(2):197–224. PubMed PMID: ISI:000088019800007.
  • Marie D, Partensky F, Jacquet S, et al. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR green I. Appl Environ Microbiol. 1997;63(1):186–193. PubMed PMID: 16535483; PubMed Central PMCID: PMC1389098.
  • Props R, Kerckhof FM, Rubbens P, et al. Absolute quantification of microbial taxon abundances. Isme J. 2017;11(2):584–587. PubMed PMID: 27612291; PubMed Central PMCID: PMC5270559.
  • Amann RI, Binder BJ, Olson RJ, et al. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol. 1990;56(6):1919–1925. Epub 1990/06/01.PubMed PMID: 2200342; PubMed Central PMCID: PMCPMC184531.
  • Amann R, Fuchs BM. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Rev Microbiol. 2008;6(5):339–348. Epub 2008/04/17. PubMed PMID: 18414500.
  • Widder S, Allen RJ, Pfeiffer T, et al. Challenges in microbial ecology: building predictive understanding of community function and dynamics. Isme J. 2016 Nov;10:2557–2568. PubMed PMID: 27022995; PubMed Central PMCID: PMC5113837 declare no conflict of interest.
  • Kontos A, Lushington K, Martin J, Schwarz Q, Green R, Wabnitz D, et al. Relationship between Vascular Resistance and Sympathetic Nerve Fiber Density in Arterial Vessels in Children With Sleep Disordered Breathing. J Am Heart Assoc. 2017;6(7). Epub 2017/07/19. doi: 10.1161/JAHA.117.006137. PubMed PMID: 28716800; PubMed Central PMCID: PMCPMC5586314.
  • Wu J, Peters BA, Dominianni C, et al. Cigarette smoking and the oral microbiome in a large study of American adults. Isme J. 2016 Oct;10:2435–2446. Epub 2016/03/26. PubMed PMID: 27015003; PubMed Central PMCID: PMCPMC5030690.
  • Fan X, Peters BA, Jacobs EJ, et al. Drinking alcohol is associated with variation in the human oral microbiome in a large study of American adults. Microbiome. 2018;6(1):59. PubMed PMID: 29685174.
  • Human Microbiome Project C. Structure, function and diversity of the healthy human microbiome. Nature. 2012;486(7402):207–214. PubMed PMID: 22699609; PubMed Central PMCID: PMC3564958.
  • Biswas K, Hoggard M, Jain R, Taylor MW, Douglas RG. The nasal microbiota in health and disease: variation within and between subjects. Front Microbiol. 2015;9:134. Epub 2015/03/19. doi: 10.3389/fmicb.2015.00134. PubMed PMID: 25784909; PubMed Central PMCID: PMCPMC5810306.
  • Nasidze I, Li J, Quinque D, et al. Global diversity in the human salivary microbiome. Genome Res. 2009;19(4):636–643. PubMed PMID: 19251737; PubMed Central PMCID: PMC2665782.
  • Storey JD. A direct approach to false discovery rates. J Roy Stat Soc B. 2002;64:479–498.
  • Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498–2504. PubMed PMID: 14597658; PubMed Central PMCID: PMC403769.
  • Zaura E, Nicu EA, Krom BP, et al. Acquiring and maintaining a normal oral microbiome: current perspective. Front Cell Infect Microbiol. 2014;4:85. Epub 2014/07/16. PubMed PMID: 25019064; PubMed Central PMCID: PMCPMC4071637.
  • Fabian TK, Fejerdy P, Csermely P. Salivary genomics, transcriptomics and proteomics: the emerging concept of the oral ecosystem and their use in the early diagnosis of cancer and other diseases. Curr Genomics. 2008;9(1):11–21. PubMed PMID: 19424479; PubMed Central PMCID: PMC2674305.
  • Allaker RP, Waite RD, Hickling J, et al. Topographic distribution of bacteria associated with oral malodour on the tongue. Arch Oral Biol. 2008;53(Suppl 1):S8–S12. PubMed PMID: 18460402.
  • Knowles B, Silveira CB, Bailey BA, et al. Lytic to temperate switching of viral communitie. Nature. 2016;531(7595):466–470. PubMed PMID: 26982729.
  • Silveira CB, Rohwer FL. Piggyback-the-winner in host-associated microbial communities. NPJ Biofilms Microbiomes. 2016;2:16010. PubMed PMID: 28721247; PubMed Central PMCID: PMC5515262.
  • Thie NM, Kato T, Bader G, et al. The significance of saliva during sleep and the relevance of oromotor movements. Sleep Med Rev. 2002;6(3):213–227. PubMed PMID: 12531122.
  • Dawes C. Circadian rhythms in human salivary flow rate and composition. J Physiol. 1972;220(3):529–545. PubMed PMID: 5016036; PubMed Central PMCID: PMC1331668.
  • Dawes C. A mathematical model of salivary clearance of sugar from the oral cavity. Caries Res. 1983;17(4):321–334. Epub 1983/01/01. PubMed PMID: 6575870.
  • Murray PA, Prakobphol A, Lee T, et al. Adherence of oral streptococci to salivary glycoproteins. Infect Immun. 1992;60(1):31–38. PubMed PMID: 1729194; PubMed Central PMCID: PMC257499.
  • Plummer C, Douglas CWI. Relationship between the ability of oral streptococci to interact with platelet glycoprotein Ib alpha and with the salivary low-molecular-weight mucin, MG2. FEMS Immunol Med Microbiol. 2006;48(3):390–399. PubMed PMID: WOS:000242487500012.
  • Frenkel ES, Ribbeck K. Salivary mucins in host defense and disease prevention. J Oral Microbiol. 2015;7:29759. PubMed PMID: 26701274; PubMed Central PMCID: PMC4689954.
  • Dawes C, MacPherson LM. The distribution of saliva and sucrose around the mouth during the use of chewing gum and the implications for the site-specificity of caries and calculus deposition. J Dent Res. 1993;72(5):852–857. PubMed PMID: 8501281.
  • Atarashi K, Suda W, Luo C, et al. Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation. Science. 2017;358(6361):359–365. PubMed PMID: 29051379; PubMed Central PMCID: PMC5682622.
  • Cao X. Intestinal inflammation induced by oral bacteria. Science. 2017;358(6361):308–309. PubMed PMID: 29051367.
  • Chen Y, Ji F, Guo J, et al. Dysbiosis of small intestinal microbiota in liver cirrhosis and its association with etiology. Sci Rep. 2016;6:34055. PubMed PMID: 27687977; PubMed Central PMCID: PMC5043180.
  • Gevers D, Kugathasan S, Denson LA, et al. The treatment-naive microbiome in new-onset Crohn’s disease. Cell Host Microbe. 2014;15(3):382–392. PubMed PMID: 24629344; PubMed Central PMCID: PMC4059512.
  • Sears CL, Garrett WS. Microbes, microbiota, and colon cancer. Cell Host Microbe. 2014;15(3):317–328. PubMed PMID: 24629338; PubMed Central PMCID: PMC4003880.
  • Xu H, Li X, Zheng X, et al. Pediatric obstructive sleep apnea is associated with changes in the oral microbiome and urinary metabolomics profile: a pilot study. J Clin Sleep Med. 2018;14(9):1559–1567. Epub 2018/09/05. PubMed PMID: 30176961; PubMed Central PMCID: PMCPMC6134247.
  • Wu BG, Sulaiman I, Wang J, et al. Severe obstructive sleep apnea is associated with alterations in the nasal microbiome and an increase in inflammation. Am J Respir Crit Care Med. 2019;199(1):99–109. Epub 2018/ 07/04. PubMed PMID: 29969291.
  • Amin R, Somers VK, McConnell K, et al. Activity-adjusted 24-hour ambulatory blood pressure and cardiac remodeling in children with sleep disordered breathing. Hypertension. 2008;51(1):84–91. Epub 2007/ 12/12. PubMed PMID: 18071053.
  • Amin RS, Carroll JL, Jeffries JL, et al. Twenty-four-hour ambulatory blood pressure in children with sleep-disordered breathing. Am J Respir Crit Care Med. 2004;169(8):950–956. Epub 2004/02/07. PubMed PMID: 14764433.
  • Marcus CL, Greene MG, Carroll JL. Blood pressure in children with obstructive sleep apnea. Am J Respir Crit Care Med. 1998;157(4 Pt 1):1098–1103. Epub 1998/05/01. PubMed PMID: 9563725.
  • Nisbet LC, Yiallourou SR, Nixon GM, et al. Characterization of the acute pulse transit time response to obstructive apneas and hypopneas in preschool children with sleep-disordered breathing. Sleep Med. 2013;14(11):1123–1131. Epub 2013/09/21. PubMed PMID: 24047534.
  • Sun SS, Grave GD, Siervogel RM, et al. Systolic blood pressure in childhood predicts hypertension and metabolic syndrome later in life. Pediatrics. 2007;119(2):237–246. Epub 2007/02/03. PubMed PMID: 17272612.
  • Bik EM, Long CD, Armitage GC, et al. Bacterial diversity in the oral cavity of 10 healthy individuals. Isme J. 2010;4(8):962–974. PubMed PMID: 20336157; PubMed Central PMCID: PMC2941673.
  • Crielaard W, Zaura E, Schuller AA, et al. Exploring the oral microbiota of children at various developmental stages of their dentition in the relation to their oral health. Bmc Med Genomics. 2011;4:22. Epub 2011/03/05. PubMed PMID: 21371338; PubMed Central PMCID: PMCPMC3058002.