Lasting Gammaproteobacteria profile changes characterized hematological cancer patients who developed oral mucositis following conditioning therapy

References

• Bacigalupo A, Ballen K, Rizzo D, et al. Defining the intensity of conditioning regimens: working definitions. Biol Blood Marrow Transplant. 2009;15(12):1628–10.
   PubMed Web of Science ®Google Scholar
• D’Souza A, Fretham C Current uses and outcomes of hematopoietic cell transplantation (HCT): CIBMTR summary slides. 2018. [cited 2019 Oct 29]. https://www.cibmtr.org.
   Google Scholar
• Peterson DE, Srivastava R, Lalla RV. Oral mucosal injury in oncology patients: perspectives on maturation of a field. Oral Dis. 2015;21(2):133–141.
   PubMed Web of Science ®Google Scholar
• Sonis ST. New thoughts on the initiation of mucositis. Oral Dis. 2010;16(7):597–600.
   PubMed Web of Science ®Google Scholar
• Lalla RV, Sonis ST, Peterson DE. Management of oral mucositis in patients who have cancer. Dent Clin North Am. 2008;52(1):61–77, viii.
   PubMedGoogle Scholar
• Elting LS, Cooksley CD, Chambers MS, et al. Risk, outcomes, and costs of radiation-induced oral mucositis among patients with head-and-neck malignancies. Int J Radiat Oncol Biol Phys. 2007;68(4):1110–1120..
   PubMed Web of Science ®Google Scholar
• Elting LS, Keefe DM, Sonis ST, et al. Patient-reported measurements of oral mucositis in head and neck cancer patients treated with radiotherapy with or without chemotherapy: demonstration of increased frequency, severity, resistance to palliation, and impact on quality of life. Cancer. 2008;113(10):2704–2713..
   PubMed Web of Science ®Google Scholar
• Nonzee NJ, Dandade NA, Patel U, et al. Evaluating the supportive care costs of severe radiochemotherapy-induced mucositis and pharyngitis: results from a Northwestern University Costs of Cancer Program pilot study with head and neck and nonsmall cell lung cancer patients who received care at a county hospital, a Veterans Administration hospital, or a comprehensive cancer care center. Cancer. 2008;113(6):1446–1452
   Web of Science ®Google Scholar
• Elting LS, Chang YC. Costs of oral complications of cancer therapies: estimates and a blueprint for future study. J Natl Cancer Inst Monogr. 2019;2019:53.
   Google Scholar
• Brennan MT, Hasseus B, Hovan AJ, et al. Impact of oral side effects from conditioning therapy before hematopoietic stem cell transplantation: protocol for a multicenter study. JMIR Res Protoc. 2018;7(4):e103.
   Web of Science ®Google Scholar
• Saunders DP, Epstein JB, Elad S, et al. Systematic review of antimicrobials, mucosal coating agents, anesthetics, and analgesics for the management of oral mucositis in cancer patients. Support Care Cancer. 2013;21(11):3191–3207.
   PubMed Web of Science ®Google Scholar
• Vasconcelos RM, Sanfilippo N, Paster BJ, et al. Host-microbiome cross-talk in oral mucositis. J Dent Res. 2016;95(7):725–733.
   PubMed Web of Science ®Google Scholar
• Ye Y, Carlsson G, Agholme MB, et al. Pretherapeutic plasma pro- and anti- inflammatory mediators are related to high risk of oral mucositis in pediatric patients with acute leukemia: aprospective cohort study. PLoS One. 2013;8(5):e64918.
   Web of Science ®Google Scholar
• Hong BY, Sobue T, Choquette L, et al. Correction to: stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons. Microbiome. 2019;7(1):66..
   PubMed Web of Science ®Google Scholar
• Haverman TM, Raber-Durlacher JE, Rademacher WM, et al. Oral complications in hematopoietic stem cell recipients: the role of inflammation. Mediators Inflamm. 2014;2014;378281.
   Web of Science ®Google Scholar
• Laheij A, Raber-Durlacher JE, Koppelmans RGA, et al. Microbial changes in relation to oral mucositis in autologous hematopoietic stem cell transplantation recipients. Sci Rep. 2019;9(1):16929.
   Google Scholar
• Mougeot JC, Stevens CB, Morton DS, et al. Oral microbiome and cancer therapy-induced oral mucositis. J Natl Cancer Inst Monogr. 2019 Aug 1;2019(53). pii: lgz002. doi: 10.1093/jncimonographs/lgz002.
   Google Scholar
• Gomes BP, Berber VB, Kokaras AS, et al. Microbiomes of endodontic-periodontal lesions before and after chemomechanical preparation. J Endod. 2015;41(12):1975–1984
   PubMed Web of Science ®Google Scholar
• Mougeot JL, Stevens CB, Cotton SL, et al. Concordance of HOMIM and HOMI NGS technologies in the microbiome analysis of clinical samples. J Oral Microbiol. 2016;8(1):30379.
   PubMed Web of Science ®Google Scholar
• Mougeot JC, Stevens CB, Almon KG, et al. Caries-associated oral microbiome in head and neck cancer radiation patients: A longitudinal study. J Oral Microbiol. 2019;11(1):1586421. doi:10.1080/20002297.2019.1586421
   PubMed Web of Science ®Google Scholar
• Caporaso JG, Lauber CL, Walters WA, et al. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A. 2011;108(Suppl 1):4516–4522..
   PubMed Web of Science ®Google Scholar
• Afgan E, Baker D, Batut B, et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. Nucleic Acids Res. 2018;46(W1):W537–W544.
   PubMed Web of Science ®Google Scholar
• Segata N, Izard J, Waldron L, et al. Metagenomic biomarker discovery and explanation. Genome Biol. 2011;12(6):R60.
   PubMed Web of Science ®Google Scholar
• Kaul A, Mandal S, Davidov O, et al. Analysis of microbiome data in the presence of excess zeros. Front Microbiol. 2017;8:2114.
   Web of Science ®Google Scholar
• Core Team R. A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2017. [accessed 2019 Oct 29]. http://www.R-project.org/.
   Google Scholar
• Sergeant ESG Epitools epidemiological calculators. Ausvet Pty Ltd; [cited 2019 Oct 29]. http://epitools.ausvet.com.au.
   Google Scholar
• Villa A, Sonis ST. Mucositis: pathobiology and management. Curr Opin Oncol. 2015;27(3):159–164.
   PubMed Web of Science ®Google Scholar
• Krishnan K, Chen T, Paster BJ. A practical guide to the oral microbiome and its relation to health and disease. Oral Dis. 2017;23(3):276–286.
   PubMed Web of Science ®Google Scholar
• Furquim CP, Soares GM, Ribeiro LL, et al. The salivary microbiome and oral cancer risk: a pilot study in fanconi anemia. J Dent Res. 2017;96(3):292–299
   PubMed Web of Science ®Google Scholar
• Kosikowska U, Rybojad P, Stepien-Pysniak D, et al. Understanding pneumococcal serotype 1 biology through population genomic analysis. BMC Infect Dis. 2016;16(1):449..
   Google Scholar
• Wang K, Lu W, Tu Q, et al. Preliminary analysis of salivary microbiome and their potential roles in oral lichen planus. Sci Rep. 2016;6(1):22943.
   PubMed Web of Science ®Google Scholar