222
Views
0
CrossRef citations to date
0
Altmetric
Research Article

Determination of genetic diversity of multidrug-resistant Mycobacterium tuberculosis strains in Turkey using 15 locus MIRU-VNTR and spoligotyping methods

ORCID Icon, , , , &

References

  • Furin J, Cox H, Pai M. Tuberculosis. Lancet. 2019;393(10181):1642–1656.
  • World Health Organization. Global tuberculosis report 2020. WHO: Geneva, 2020 . https://www.who.int/teams/global-tuberculosisprogramme/data.
  • Tuberculosis war in Turkey 2019 report, PHIT, Ankara, 2020.
  • Singh R, Dwivedi SP, Gaharwar US, et al. Recent updates on drug resistance in Mycobacterium tuberculosis. J Appl Microbiol. 2020;128(6):1547–1567.
  • De Viedma D G, Pérez-Lago L. The evolution of genotyping strategies to detect, analyze, and control transmission of tuberculosis. Microbiol Spectr. 2018;6(5). DOI:10.1128/microbiolspec.MTBP-0002-2016
  • Coll P, García de Viedma D. Molecular epidemiology of tuberculosis. Enferm Infecc Microbiol Clin. 2018;36(4):233–240.
  • Christianson S, Wolfe J, Orr P, et al. Evaluation of 24 locus MIRU-VNTR genotyping of Mycobacterium tuberculosis isolates in Canada. Tuberculosis. 2010;90(1):31–38.
  • Pfyffer GE, Brown BA, Swenson JM, et al. Mycobacterium: general characteristics, isolation and staining procedures. In: editors, Murray PR, Baron EJ, Jorgensen JH, et al. Manuel of clinical microbiology. 8th ed. Washington DC: ASM Press; 2003:543–572.
  • Loddenkemper R, Sagebiel D, Brendel A. Strategies against multidrug resistant tuberculosis. Eur Respir J. 2002;36:66–77.
  • Molina-Moya B, Agonafir M, Blanco S, et al. Microbead-based spoligotyping of Mycobacterium tuberculosis from Ziehl-Neelsen-stained microscopy preparations in Ethiopia. Sci Rep. 2018;58(1):3987.
  • Alonso-Rodríguez N, Martínez-Lirola M, Herránz M, et al. Evaluation of the new advanced 15-loci MIRU-VNTR genotyping tool in Mycobacterium tuberculosis molecular epidemiology studies. BMC Microbiology. 2008;8(1):34.
  • Supply P, Mazars E, Lesjean S, et al. Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol Microbiol. 2000;36(3):762–771.
  • Weniger T, Krawczyk J, Supply P, et al. MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria. Nucleic Acids Res. 2010 Jul;38( Web Server issue):W326–31.
  • Shi J, Zheng D, Zhu Y. Role of MIRU-VNTR and spoligotyping in assessing the genetic diversity of Mycobacterium tuberculosis in Henan Province, China. BMC Infect Dis. 2018 3;18(1):447.
  • Zozio T, Allix-Beguec C, Gunal S, et al. Genotyping of Mycobacterium tuberculosis clinical isolates in two cities of Turkey: description of a new family of genotypes that is phylogeographically specific for Asia Minor. BMC Microbiol. 2005;5(1):44.
  • Otlu B, Durmaz R, Gunal S, et al. Beijing/W and major spoligotype families of Mycobacterium tuberculosis strains isolated from tuberculosis patients in Eastern Turkey. New Microbiol. 2009;32(3):255–263.
  • Durmaz R, Zozio T, Gunal S, et al. Genetic diversity and major spoligotype families of drug-resistant Mycobacterium tuberculosis clinical isolates from different regions of Turkey. Infect Genet Evol. 2007;7(4):513–519.
  • Karsligil T, Bayram A, Ekşi F. Determination of genotypic varieties and genotyping of multiple drug-resistant tuberculosis by the RFLP and spoligotyping methods. Turk J Med Sci. 2016;46:1502–1511.
  • Gunal S. Determination of IS6110 RFLP (restriction fragment length polymorphism) and spoligotyping profiles of Mycobacterium tuberculosis isolates collected from different geographical regions of Turkey. Doctoral Thesis, 2006. İnönü University Faculty of Medicine, Malatya
  • Durmaz R, Zozio T, Gunal S, et al. Population-based molecular epidemiological study of tuberculosis in Malatya, Turkey. J Clin Microbiol. 2007;45(12):4027–4035.
  • Farnia P, Mohammad M, Varahram M. The recent-transmission of Mycobacterium tuberculosis strains among Iranian and Afghan relapse cases: a DNA-fingerprinting using RFLP and spoligotyping. BMC Infect Dis. 2008;8(1):109.
  • Niemann S, Diel R, Khechinashvili G, et al. Mycobacterium tuberculosis Beijing lineage favors the spread of multidrug-resistant tuberculosis in the Republic of Georgia. J Clin Microbiol. 2010;48(10):3544–3550.
  • Valcheva V, Mokrousov I, Narvskaya O, et al. Utility of new 24-locus variable-number tandem repeat typing for discriminating Mycobacterium tuberculosis clinical isolates collected in Bulgaria. J Clin Microbiol. 2008;46(9):3005–3011.
  • Maghradze N, Jugheli L, Borrell S, et al. Classifying recurrent Mycobacterium tuberculosis cases in Georgia using MIRU-VNTR typing. PLoS ONE. 2019;14(10):e0223610.
  • Ramazanzadeh R, Shakib P, Rouhi S, et al. Molecular epidemiology of Mycobacterium tuberculosis isolates in Iran using spoligotyping. New Microbes New Infect. 2020;38:100767.
  • Haeili M, Darban‐Sarokhalil D, Fooladi AAI, et al. Spoligotyping and drug resistance patterns of Mycobacterium tuberculosis isolates from five provinces of Iran. Microbiologyopen. 2013;2(6):988–996.
  • Nieto Ramirez LM, Ferro BE, Diaz G, et al. Genetic profiling of Mycobacterium tuberculosis revealed “modern” Beijing strains linked to MDR TB from Southwestern Colombia. PLoS ONE. 2020;15(4):e0224908.
  • Barnes PF, Cave MD. Molecular epidemiology of tuberculosis. N Engl J Med. 2003;349(12):1149–1156.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.