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Research Articles

An interpretation of the genetic polymorphism and population genetic background of Ankang Han population via a novel InDel panel

, , , , , , , & show all
Pages 694-701 | Received 27 May 2021, Accepted 21 Oct 2021, Published online: 13 Dec 2021

References

  • Iyavoo S, Afolabi O, Boggi B, et al. Population genetics data for 22 autosomal STR loci in European, South Asian and African populations using SureID® 23comp human DNA identification kit. Forensic Sci Int. 2019;301:174–181.
  • Zhang J, Bao Y, Tao R, et al. Genetic polymorphisms of 21 STR loci of GoldeneyeTM DNA ID 22NC kit in five ethnic groups of China. Forensic Sci Res. 2019;4:348–350.
  • Lu Y, Sun HJ, Zhou JC, et al. Genetic polymorphisms, forensic efficiency and phylogenetic analysis of 17 autosomal STR loci in the Han population of Wuxi, Eastern China. Ann Hum Biol. 2019;46:601–605.
  • Mills RE, Pittard WS, Mullaney JM, et al. Natural genetic variation caused by small insertions and deletions in the human genome. Genome Res. 2011;21:830–839.
  • Shahzad M, Hussain M, Shafique M, et al. Population genetic data of 30 insertion-deletion markers in Punjabi population of Pakistan. Int J Legal Med. 2020;134:511–512.
  • Wang M, Du W, He G, et al. Revisiting the genetic background and phylogenetic structure of five Sino-Tibetan-speaking populations: insights from autosomal InDels. Mol Genet Genomics. 2020;295:969–979.
  • Liu Y, Jin X, Lan Q, et al. Forensic characteristic and population structure dissection of Shaanxi Han population in the light of diallelic deletion/insertion polymorphism data. Genomics. 2020;112:3837–3845.
  • Wang F, He G, Wang Z, et al. Population genetics and forensic efficiency of 30 InDel markers in four Chinese ethnic groups residing in Sichuan. Forensic Sci Res. 2022;7:498–502.
  • Sun K, Yun L, Zhang C, et al. Evaluation of 12 multi-InDel markers for forensic ancestry prediction in Asian populations. Forensic Sci Int Genet. 2019. 2019;43:102155.
  • Mills RE, Luttig CT, Larkins CE, et al. An initial map of insertion and deletion (INDEL) variation in the human genome. Genome Res. 2006;16:1182–1190.
  • Cui W, Jin X, Guo Y, et al. An innovative panel containing a set of insertion/deletion loci for individual identification and its forensic efficiency evaluations in Chinese Hui ethnic minority. Mol Genet Genomic Med. 2020;8:e1074.
  • Liu Y, Zhang H, He G, et al. Forensic features and population genetic structure of dong, Yi, Han, and Chuanqing human populations in southwest China inferred from insertion/deletion markers. Front Genet. 2020;11:360.
  • Liu J, Du W, Wang M, et al. Forensic features, genetic diversity and structure analysis of three Chinese populations using 47 autosomal InDels. Forensic Sci Int Genet. 2020;45:102227.
  • Santos VR, Pena HB, Pena SD. A multiplex panel of short-amplicon insertion-deletion DNA polymorphisms for forensic analysis. Genet Mol Res. 2015;14:2947–2952.
  • Huang Y, Liu C, Xiao C, et al. Development of a new 32-plex InDels panel for forensic purpose. Forensic Sci Int Genet. 2020;44:102171.
  • Jin R, Cui W, Fang Y, et al. A novel panel of 43 insertion/deletion loci for human identifications of forensic degraded DNA samples: development and validation. Front Genet. 2021;12:610540.
  • Gao Y, Zhang C, Yuan L, et al. PGG.Han: the Han Chinese genome database and analysis platform. Nucleic Acids Res. 2020;48:D971–D976.
  • Li YC, Ye WJ, Jiang CG, et al. River valleys shaped the maternal genetic landscape of Han Chinese. Mol Biol Evol. 2019;36:1643–1652.
  • Yang X, Wang XX, He G, et al. Genomic insight into the population history of Central Han Chinese. Ann Hum Biol. 2020;15:1–13.
  • The 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature. 2015;526:68–74.
  • Excoffier L, Laval G, Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol Bioinform. 2007;1:47–50.
  • Gouy A, Zieger M. STRAF — a convenient online tool for STR data evaluation in forensic genetics. Forensic Sci Int Genet. 2017;30:148–151.
  • Yoo J, Lee Y, Kim Y, et al. SNPAnalyzer 2.0: a web-based integrated workbench for linkage disequilibrium analysis and association analysis. BMC Bioinformatics. 2008;9:290.
  • Ota T. DISPAN: genetic distance and phylogenetic analysis. University (PA): Institute of Molecular Evolutionary Genetics; 1993.
  • Rousset F. Genepop’007: a complete re-implementation of the Genepop software for Windows and Linux. Mol Ecol Resour. 2008;8:103–106.
  • Kumar S, Stecher G, Tamura K. MEGA 7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–1874.
  • Felsenstein J. PHYLIP-phylogeny inference package (version 3.2). Cladistics. 1989;5:164–166.
  • Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA. 1973;70:3321–3323.
  • Vilas A, Perez-Figueroa A, Quesada H, et al. Allelic diversity for neutral markers retains a higher adaptive potential for quantitative traits than expected heterozygosity. Mol Ecol. 2015;24:4419–4432.
  • Botstein D, White RL, Skolnick M, et al. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet. 1980;32:314–331.
  • Serrote CML, Reiniger LRS, Silva KB, et al. Determining the Polymorphism Information Content of a molecular marker. Gene. 2020;726:144175.
  • Wright S. Evolution and the genetics of population, variability within and among natural populations. Chicago (IL): The University of Chicago Press; 1978.
  • Nei M, Tajima F, Tateno Y. Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol. 1983;19:153–170.
  • Kotu V, Deshpande B. Chapter 14 — Feature selection. In: Kotu V, Deshpande B, editors. Data science. 2nd ed. Burlington (UK): Morgan Kaufmann; 2019. p. 467–490.
  • Zhang M, Yan S, Pan W, et al. Phylogenetic evidence for Sino-Tibetan origin in Northern China in the late neolithic. Nature. 2019;569:112–115.
  • Su B, Xiao C, Deka R, et al. Y chromosome haplotypes reveal prehistorical migrations to the Himalayas. Hum Genet. 2000;107:582–590.
  • Chen J, Zheng H, Bei JX, et al. Genetic structure of the Han Chinese population revealed by genome-wide SNP variation. Am J Hum Genet. 2009;85:775–785.
  • Zhao YB, Zhang Y, Zhang QC, et al. Ancient DNA reveals that the genetic structure of the Northern Han Chinese was shaped prior to 3,000 years ago. PLoS One. 2015;10:e0125676.
  • Xu S, Yin X, Li S, et al. Genomic dissection of population substructure of Han Chinese and its implication in association studies. Am J Hum Genet. 2009;85:762–774.