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Research Paper

Understanding Mucor circinelloides pathogenesis by comparative genomics and phenotypical studies

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Pages 707-720 | Received 17 May 2017, Accepted 25 Jan 2018, Published online: 18 Apr 2018

References

  • Torres-Narbona M, Guinea J, Martinez-Alarcon J, et al. Impact of zygomycosis on microbiology workload: a survey study in Spain. J Clin Microbiol. 2007;45(6):2051−3.
  • Kontoyiannis DP, Lewis RE. How I treat mucormycosis. Blood. 2011;118(5):1216−24.
  • Katragkou A, Walsh TJ, Roilides E. Why is mucormycosis more difficult to cure than more common mycoses? Clin Microbiol Infect. 2014;20(Suppl 6):74−81.
  • Li CH, Cervantes M, Springer DJ, et al. Sporangiospore size dimorphism is linked to virulence of Mucor circinelloides. PLoS Pathog. 2011;7(6):e1002086.
  • Arana DM, Prieto D, Roman E, et al. The role of the cell wall in fungal pathogenesis. Microbial Biotechnology. 2009;2(3):308−20.
  • Stergiopoulos I, de Wit PJ. Fungal effector proteins. Ann Rev Phytopath. 2009;47:233−63.
  • Kurokawa CS, Sugizaki MF, Peracoli MT. Virulence factors in fungi of systemic mycoses. Rev Inst Med Trop Sao Paulo. 1998;40(3):125−35.
  • De Groot PW, Ram AF, Klis FM. Features and functions of covalently linked proteins in fungal cell walls. Fungal Genet Biol. 2005;42(8):657−75.
  • Castillo L, Calvo E, Martinez AI, et al. A study of the Candida albicans cell wall proteome. Proteomics. 2008;8(18):3871−81.
  • Lopez-Fernandez L, Roncero MI, Prieto A, et al. Comparative proteomic analyses reveal that Gnt2-mediated N-glycosylation affects cell wall glycans and protein content in Fusarium oxysporum. J Proteom. 2015;128:189−202.
  • Bliska JB, Casadevall A. Intracellular pathogenic bacteria and fungi–a case of convergent evolution? Nature Rev. 2009;7(2):165−71.
  • Seider K, Heyken A, Luttich A, et al. Interaction of pathogenic yeasts with phagocytes: survival, persistence and escape. Curr Opinion Microbiol. 2010;13(4):392−400.
  • Okagaki LH, Strain AK, Nielsen JN, et al. Cryptococcal cell morphology affects host cell interactions and pathogenicity. PLoS Path. 2010;6(6):e1000953.
  • Yamamoto N, Bibby K, Qian J, et al. Particle-size distributions and seasonal diversity of allergenic and pathogenic fungi in outdoor air. The ISME journal. 2012;6(10):1801−11.
  • Cisse OH, Pagni M, Hauser PM. Comparative genomics suggests that the human pathogenic fungus Pneumocystis jirovecii acquired obligate biotrophy through gene loss. Gen Biol Evol. 2014;6(8):1938−48.
  • Kellner M, Burmester A, Wostemeyer A, et al. Transfer of genetic information from the mycoparasite Parasitella parasitica to its host Absidia glauca. Current Genetics. 1993;23(4):334−7.
  • Khaldi N, Collemare J, Lebrun MH, et al. Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi. Genome Biol. 2008;9(1):R18.
  • de Groot PW, Ruiz C, Vazquez de Aldana CR, et al. A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae. Comp Func Genomics. 2001;2(3):124−42.
  • Baker LG, Specht CA, Donlin MJ, et al. Chitosan, the deacetylated form of chitin, is necessary for cell wall integrity in Cryptococcus neoformans. Eukaryotic Cell. 2007;6(5):855−67.
  • O'Dea EM, Amarsaikhan N, Li H, et al. Eosinophils are recruited in response to chitin exposure and enhance Th2-mediated immune pathology in Aspergillus fumigatus infection. Infect Immunity. 2014;82(8):3199−205.
  • Elieh Ali Komi D, Sharma L, Dela Cruz CS. Chitin and its effects on inflammatory and immune responses. Clinic Rev Allergy Immunol. 2017;[Epub ahead of print];http://doi.org/10.1007/s12016-017-8600-0.
  • Bueter CL, Lee CK, Wang JP, et al. Spectrum and mechanisms of inflammasome activation by chitosan. J Immunol. 2014;192(12):5943−51.
  • Sanchez-Vallet A, Mesters JR, Thomma BP. The battle for chitin recognition in plant-microbe interactions. FEMS Microbiol Rev. 2014;39(2):171−83.
  • Schwartze VU, Winter S, Shelest E, et al. Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina). PLoS Genet. 2014;10(8):e1004496.
  • Corrochano LM, Kuo A, Marcet-Houben M, et al. Expansion of signal transduction pathways in fungi by extensive genome duplication. Curr Biol. 2016;26(12):1577−84.
  • Bueter CL, Specht CA, Levitz SM. Innate sensing of chitin and chitosan. PLoS Pathog. 2013;9(1):e1003080.
  • Gao S, Li Y, Gao J, et al. Genome sequence and virulence variation-related transcriptome profiles of Curvularia lunata, an important maize pathogenic fungus. BMC Genomics. 2014;15:627.
  • Wöstemeyer J, Ellenberger S, Schulz E, et al. Fusion parasitism between Parasitella parasitica and its host Absidia glauca: A system between sexuality and parasitism. Endocyt Cell Res. 2016;27(3):24–32.
  • Heeswijck R, Roncero M. High frequency transformation of Mucor with recombinant plasmid DNA. Calsberg Res Commun. 1984;49:691−702.
  • Nicolas FE, de Haro JP, Torres-Martinez S, et al. Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects. Fungal Genet Biol. 2007;44(6):504−16.
  • Dixon DM, Polak A, Walsh TJ. Fungus dose-dependent primary pulmonary aspergillosis in immunosuppressed mice. Infect Immun. 1989;57(5):1452−6.
  • Fernandez-Molina JV, Abad-Diaz-de-Cerio A, Sueiro-Olivares M, et al. Rapid and specific detection of section Fumigati and Aspergillus fumigatus in human samples using a new multiplex real-time PCR. Diagn Microbiol Infect Dis. 2014;80(2):111−8.
  • Lopez-Fernandez L, Ruiz-Roldan C, Pareja-Jaime Y, et al. The Fusarium oxysporum gnt2, encoding a putative N-acetylglucosamine transferase, is involved in cell wall architecture and virulence. PloS One. 2013;8(12):e84690.
  • Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 2014;30(15):2114−20.
  • Leggett RM, Ramirez-Gonzalez RH, Clavijo BJ, et al. Sequencing quality assessment tools to enable data-driven informatics for high throughput genomics. Front Genet. 2013;4:288.
  • Luo R, Liu B, Xie Y, et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience. 2012;1(1):18.
  • Patel RK, Jain M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PloS One. 2012;7(2):e30619.
  • Swain MT, Tsai IJ, Assefa SA, et al. A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs. Nature Protocols. 2012;7(7):1260−84.
  • Li H, Durbin R. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics. 2009;25(14):1754−60.
  • Milne I, Bayer M, Cardle L, et al. Tablet–next generation sequence assembly visualization. Bioinformatics. 2009;26(3):401−2.
  • Li H, Handsaker B, Wysoker A, et al. The sequence alignment/map format and SAM tools. Bioinformatics. 2009;25(16):2078−9.
  • Carver T, Harris SR, Berriman M, et al. Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data. Bioinformatics. 2012;28(4):464−9.
  • Zamani A, Edebo L, Sjostrom B, et al. Extraction and precipitation of chitosan from cell wall of zygomycetes fungi by dilute sulfuric acid. Biomacromolecules. 2007;8(12):3786−90.
  • Amorim RV, Souza W, Fukushima K, et al. Faster chitosan production by Mucoralean strains in submerged culture. Braz J Microbiol. 2001;32:20−3.
  • Torres AM, Weeden NF, Martin A. Linkage among isozyme, RFLP and RAPD markers in Vicia faba. Theor Appl Genet. 1993;85(8):937−45.
  • Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983;166(4):557−80.
  • Gutierrez A, Lopez-Garcia S, Garre V. High reliability transformation of the basal fungus Mucor circinelloides by electroporation. J Microbiol Methods. 2011;84(3):442−6.
  • Di Pietro A, Roncero MIG. Cloning, Expression, and Role in Pathogenicity of pg1 Encoding the Major Extracellular Endopolygalacturonase of the Vascular Wilt Pathogen Fusarium oxysporum. MPMI. 1997;11(2):91−8.