A nucleic acid detection assay combining reverse transcription recombinase-aided amplification with a lateral flow dipstick for the rapid visual detection of porcine deltacoronavirus

References

• Jung K, Hu H, Saif LJ. Porcine deltacoronavirus infection: etiology, cell culture for virus isolation and propagation, molecular epidemiology and pathogenesis. Virus Res. 2016;226:50–59.
   PubMed Web of Science ®Google Scholar
• Zhang J. Porcine deltacoronavirus: overview of infection dynamics, diagnostic methods, prevalence and genetic evolution. Virus Res. 2016;226:71–84.
   PubMed Web of Science ®Google Scholar
• Hu H, Jung K, Vlasova AN, et al. Isolation and characterization of porcine deltacoronavirus from pigs with diarrhea in the United states. J Clin Microbiol. 2015;53(5):1537–1548.
   PubMed Web of Science ®Google Scholar
• Woo PC, Lau SK, Lam CS, et al. Discovery of seven novel mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J Virol. 2012;86(7):3995–4008.
   PubMed Web of Science ®Google Scholar
• Wang L, Byrum B, Zhang Y. Detection and genetic characterization of deltacoronavirus in pigs, Ohio, USA, 2014. Emerg Infect Dis. 2014;20(7):1227–1230.
   PubMed Web of Science ®Google Scholar
• Hu H, Jung K, Vlasova AN, et al. Experimental infection of gnotobiotic pigs with the cell-culture-adapted porcine deltacoronavirus strain OH-FD22. Arch Virol. 2016;161(12):3421–3434.
   PubMed Web of Science ®Google Scholar
• Vitosh-Sillman S, Loy JD, Brodersen B, et al. Experimental infection of conventional nursing pigs and their dams with porcine deltacoronavirus. J Vet Diagn Invest. 2016;28(5):486–497.
   PubMed Web of Science ®Google Scholar
• Kong F, Wang Q, Kenney SP, et al. Porcine deltacoronaviruses: origin, evolution, cross-species transmission and zoonotic potential. Pathogens. 2022;11(1):79.
   PubMed Web of Science ®Google Scholar
• Lednicky JA, Tagliamonte MS, White SK, et al. Independent infections of porcine deltacoronavirus among Haitian children. Nature. 2021;600(7887):133–137.
   PubMed Web of Science ®Google Scholar
• Boley PA, Alhamo MA, Lossie G, et al. Porcine deltacoronavirus infection and transmission in poultry, United states. Emerg Infect Dis. 2020;26(2):255–265.
   PubMed Web of Science ®Google Scholar
• Jung K, Hu H, Saif LJ. Calves are susceptible to infection with the newly emerged porcine deltacoronavirus, but not with the swine enteric alphacoronavirus, porcine epidemic diarrhea virus. Arch Virol. 2017;162(8):2357–2362.
   PubMed Web of Science ®Google Scholar
• Li W, Hulswit RJG, Kenney SP, et al. Broad receptor engagement of an emerging global coronavirus may potentiate its diverse cross-species transmissibility. Proc Natl Acad Sci U S A. 2018;115:E5135–E43.
   PubMed Web of Science ®Google Scholar
• Ye X, Chen Y, Zhu X, et al. Cross-Species transmission of deltacoronavirus and the origin of porcine deltacoronavirus. Evol Appl. 2020;13(9):2246–2253.
   PubMed Web of Science ®Google Scholar
• Zhang H, Han F, Shu X, et al. Co-Infection of porcine epidemic diarrhoea virus and porcine deltacoronavirus enhances the disease severity in piglets. Transbound Emerg Dis. 2022;69(4):1715–1726.
   PubMed Web of Science ®Google Scholar
• Zhang F, Luo S, Gu J, et al. Prevalence and phylogenetic analysis of porcine diarrhea associated viruses in southern china from 2012 to 2018. BMC Vet Res. 2019;15(1):470.
   PubMed Web of Science ®Google Scholar
• Liu Q, Wang HY. Porcine enteric coronaviruses: an updated overview of the pathogenesis, prevalence, and diagnosis. Vet Res Commun. 2021;45(2–3):75–86.
   PubMed Web of Science ®Google Scholar
• Wang Q, Vlasova AN, Kenney SP, et al. Emerging and re-emerging coronaviruses in pigs. Curr Opin Virol. 2019;34:39–49.
   PubMed Web of Science ®Google Scholar
• Turlewicz-Podbielska H, Pomorska-Mo´l M. Porcine coronaviruses: overview of the state of the art. Virol Sin. 2021;36(5):833–851.
   PubMed Web of Science ®Google Scholar
• Ma L, Zeng F, Huang B, et al. Development of a conventional RT-PCR assay for rapid detection of porcine deltacoronavirus with the same detection limit as a SYBR green-based real-time RT-PCR assay. Biomed Res Int. 2018;2018:5035139.
   PubMed Web of Science ®Google Scholar
• Pan Z, Lu J, Wang N, et al. Development of TaqMan-probe-based multiplex real-time PCR for the simultaneous detection of emerging and reemerging swine coronaviruses. Virulence. 2020;11(1):707–718.
   PubMedGoogle Scholar
• Zhou L, Chen Y, Fang X, et al. Microfluidic-RT-LAMP chip for the point-of-care detection of emerging and re-emerging enteric coronaviruses in swine. Anal Chim Acta. 2020;1125:57–65.
   PubMed Web of Science ®Google Scholar
• Okda F, Lawson S, Liu X, et al. Development of monoclonal antibodies and serological assays including indirect ELISA and fluorescent microsphere immunoassays for diagnosis of porcine deltacoronavirus. BMC Vet Res. 2016;12(1):95.
   PubMedGoogle Scholar
• Wang W, Li J, Fan B, et al. Development of a novel double antibody sandwich ELISA for quantitative detection of porcine deltacoronavirus antigen. Viruses. 2021;13(12):2403.
   PubMed Web of Science ®Google Scholar
• Wang W, Zhou L, Ge X, et al. Development of a VP2-based real-time fluorescent reverse transcription recombinase-aided amplification assay to rapidly detect senecavirus a. Transbound Emerg Dis. 2021: Online ahead of print. DOI:10.1111/tbed.14435.
   Web of Science ®Google Scholar
• Zheng YZ, Chen JT, Li J, et al. Reverse transcription recombinase-aided amplification assay with lateral flow dipstick assay for rapid detection of 2019 novel coronavirus. Front Cell Infect Microbiol. 2021;11:613304.
   PubMed Web of Science ®Google Scholar
• Fan X, Li L, Zhao Y, et al. Clinical validation of two recombinase-based isothermal amplification assays (RPA/RAA) for the rapid detection of African swine fever virus. Front Microbiol. 2020;11:1696.
   PubMed Web of Science ®Google Scholar
• Tu F, Yang X, Xu S, et al. Development of a fluorescent probe-based real-time reverse transcription recombinase-aided amplification assay for the rapid detection of classical swine fever virus. Transbound Emerg Dis. 2021;68(4):2017–2027.
   PubMed Web of Science ®Google Scholar
• Li F, He P, Xiong D, et al. A reverse transcription recombinase-aided amplification method for rapid and point-of-care detection of sars-CoV-2, including variants. Viruses. 2021;13(9):1875.
   PubMed Web of Science ®Google Scholar
• Hristov DR, Rodriguez-Quijada C, Gomez-Marquez J, et al. Designing paper-based immunoassays for biomedical applications. Sensors (Basel). 2019;19(3):554.
   PubMed Web of Science ®Google Scholar
• Magiati M, Sevastou A, Kalogianni DP. A fluorometric lateral flow assay for visual detection of nucleic acids using a digital camera readout. Mikrochim Acta. 2018;185(6):314.
   PubMed Web of Science ®Google Scholar
• Wu H, Zhao P, Yang X, et al. A recombinase polymerase amplification and lateral flow strip combined method that detects salmonella enterica serotype Typhimurium with no worry of primer-dependent artifacts. Front Microbiol. 2020;11:1015.
   PubMed Web of Science ®Google Scholar
• Abd El Wahed A, El-Deeb A, El-Tholoth M, et al. A portable reverse transcription recombinase polymerase amplification assay for rapid detection of foot-and-mouth disease virus. PLoS One. 2013;8(8):e71642.
   PubMed Web of Science ®Google Scholar
• Boyle DS, Lehman DA, Lillis L, et al. Rapid detection of HIV-1 proviral DNA for early infant diagnosis using recombinase polymerase amplification. Mbio. 2013;4(2):e00135–13.
   PubMed Web of Science ®Google Scholar
• Tang P, Cui E, Song Y, et al. Porcine deltacoronavirus and its prevalence in china: a review of epidemiology, evolution, and vaccine development. Arch Virol. 2021;166(11):2975–2988.
   PubMed Web of Science ®Google Scholar
• Liang Q, Zhang H, Li B, et al. Susceptibility of chickens to porcine deltacoronavirus infection. Viruses. 2019;11(6):573.
   PubMed Web of Science ®Google Scholar
• Gao X, Liu X, Zhang Y, et al. Rapid and visual detection of porcine deltacoronavirus by recombinase polymerase amplification combined with a lateral flow dipstick. BMC Vet Res. 2020;16(1):130.
   PubMed Web of Science ®Google Scholar
• Zhang F, Ye Y, Song D, et al. A simple and rapid identification method for newly emerged porcine deltacoronavirus with loop-mediated isothermal amplification. Biol Res. 2017;50(1):30.
   PubMedGoogle Scholar
• Safavieh M, Kanakasabapathy MK, Tarlan F, et al. Emerging loop-mediated isothermal amplification-based microchip and microdevice technologies for nucleic acid detection. Acs Biomater Sci Eng. 2016;2(3):278–294.
   PubMed Web of Science ®Google Scholar
• Notomi T, Okayama H, Masubuchi H, et al. Loop-Mediated isothermal amplification of DNA. Nucleic Acids Res. 2000;28(12):E63.
   PubMed Web of Science ®Google Scholar
• Piepenburg O, Williams CH, Stemple DL, et al. DNA detection using recombination proteins. PLoS Biol. 2006;4(7):e204.
   PubMed Web of Science ®Google Scholar