Genomic and chromatographic approach for the discovery of polyketide antimicrobial metabolites from an endophytic Phomopsis liquidambaris CBR-18

References

• Aly AH, Debbab A, Kjer J, Proksch P. 2010. Fungal endophytes from higher plants: a prolific source of phytochemicals and other bioactive natural products. Fungal Divers. 41(1):1–16. doi: 10.1007/s13225-010-0034-4
   Web of Science ®Google Scholar
• Begley MJ, Grove JF. 1985. Metabolic products of Phomopsis oblonga. Part 1. 3a,5a,6,7,8,9,9a,9b-Octahydro-7,9b-dimethylnaphtho[1,2-c]furan-1(3H)one (oblongolide). J. Chem. Soc., Perkin Trans. 1:861–863. doi: 10.1039/p19850000861
   Google Scholar
• Bhagat J, Kaur A, Sharma M, Saxena AK, Chadha BS. 2012. Molecular and functional characterization of endophytic fungi from traditional medicinal plants. World J Microbiol Biotechnol. 28:963–971. doi: 10.1007/s11274-011-0894-0
   PubMed Web of Science ®Google Scholar
• Bingle LE, Simpson TJ, Lazarus CM. 1999. Ketosynthase domain probes identify two subclasses of fungal polyketide synthase genes. Fungal Genet Biol. 26:209–223. doi: 10.1006/fgbi.1999.1115
   PubMed Web of Science ®Google Scholar
• Blunt JW, Copp BR, Keyzers RA, Munro MHG, Prinsep MR. 2012. Marine natural products. Nat. Prod. Rep. 29:144–222. doi: 10.1039/C2NP00090C
   PubMed Web of Science ®Google Scholar
• Buatong J, Phongpaichit S, Rukachaisirikul V, Sakayaroj J. 2011. Antimicrobial activity of crude extracts from mangrove fungal endophytes. World J Microbiol Biotechnol. 27:3005–3008. doi: 10.1007/s11274-011-0765-8
   Web of Science ®Google Scholar
• Bunyapaiboonsri T, Yoiprommarat S, Srikitikulchai P, Srichomthong K, Lumyong S. 2010. Oblongolides from the endophytic fungus Phomopsis sp. BCC 9789. J. Nat. Prod. 73:55–59. doi: 10.1021/np900650c
   PubMed Web of Science ®Google Scholar
• Cheng YQ, Coughlin LM, Lim SK, Shen B. 2009. Type I polyketide synthases that require discrete acyltransferases. Methods Enzymol. 459:165–186. doi: 10.1016/S0076-6879(09)04608-4
   PubMed Web of Science ®Google Scholar
• Cox RJ. 2007. Polyketides, proteins and genes in fungi: programmed nano-machines begin to reveal their secrets. Org Biomol Chem. 5:2010–2026. doi: 10.1039/b704420h
   PubMed Web of Science ®Google Scholar
• Dai CC, Yu BY, Zhao YT, Jiang JH, Yang QY. 2005. Correlation between inhibition activity of endophytic fungus from Euphorbia pekinensis and its host. J. Chin. Appl. Ecol. 16(7):1290–1294.
   Google Scholar
• Debbab A, Aly AH, Proksch P. 2012. Endophytes and associated marine derived fungi – ecological and chemical perspectives. Fungal Divers. 57:45–83. doi: 10.1007/s13225-012-0191-8
   Web of Science ®Google Scholar
• Demain AL, Sanchez S. 2009. Microbial drug discovery: 80 years of progress. J. Antibiot. 62:5–16. doi: 10.1038/ja.2008.16
   PubMed Web of Science ®Google Scholar
• Endo A, Negishi Y, Iwashita T, Mizukawa K, Hirama M. 1985. Biosynthesis of ML-236B (compactin) and monacolin K. J Antibiot (Tokyo). 38: 444–448.
   Google Scholar
• Fujii I, Watanabe A, Sankawa U, Ebizuka Y. 2001. Identification of a Claisen cyclase domain in fungal polyketide synthase WA, a naphthopyrone synthase of Aspergillus nidulans. Chem Biol. 8:189–197. doi: 10.1016/S1074-5521(00)90068-1
   PubMed Web of Science ®Google Scholar
• Fujii Y, Asahara M, Ichinoe M, Nakajima H. 2002. Fungal melanin inhibitor and related compounds from Penicillium decumbens. Phytochem. 60(7):703–708. doi: 10.1016/S0031-9422(02)00196-6
   PubMed Web of Science ®Google Scholar
• Jumpathong J, Seshime Y, Fujii I, Peberdy J, Lumyong S. 2011. Genome screening for reducing type I polyketide synthase genes in tropical fungi associated with medicinal plants. World J. Microb. Biot. 27:1989–1995. doi: 10.1007/s11274-011-0659-9
   Web of Science ®Google Scholar
• Kaul A, Bani S, Zutshi U, Suri KA, Satti NK, Suri OP. 2003. Immunopotentiating properties of Cryptolepis buchanani root extract. Phytother Res. 17:1140–1144. doi: 10.1002/ptr.1186
   PubMed Web of Science ®Google Scholar
• Kim JS, Seo SG, Jun KB, Kim JW, Kim SH. 2010. Simple and reliable DNA extraction method for the dark pigmented fungus, Cercospora sojina. Plant Pathol J. 26(3):289–292. doi: 10.5423/PPJ.2010.26.3.289
   Web of Science ®Google Scholar
• Knight V, Sanglier JJ, DiTullio D, Braccili S, Bonner P, Waters J, Hughes D, Zhang L. 2003. Diversifying microbial natural products for drug discovery. Appl Microbiol Biotechnol. 62:446–458. doi: 10.1007/s00253-003-1381-9
   PubMed Web of Science ®Google Scholar
• Komaki H, Fudou R, Iizuka T, Nakajima D, Okazaki K, Shibata D, Ojika M, Harayama S. 2008. PCR detection of type I polyketide synthase genes in myxobacteria. Appl Environ Microb. 74(17):5571–5574. doi: 10.1128/AEM.00224-08
   PubMed Web of Science ®Google Scholar
• Lin T, Lin X, Lu C, Hu Z, Huang W, Huang Y, Shen Y. 2009. Secondary metabolites of Phomopsis sp. XZ-26, an endophytic fungus from Camptotheca acuminate. Eur. J. Org. Chem. 18:2975–2982. doi: 10.1002/ejoc.200801021
   Web of Science ®Google Scholar
• Lin Y, Wang HG, Lin X, Hu ZY, Chen QC, Xu Y, Zhang XK, Chen HF. 2011. Three new oblongolides from Phomopsis sp. XZ-01, an endophytic fungus from Camptotheca acuminate. Molecules. 16:3351–3359. doi: 10.3390/molecules16043351
   PubMed Web of Science ®Google Scholar
• Marston A. 2011. Thin-layer chromatography with biological detection in phytochemistry. Planar Chromatogr. 1218:2676–2683. doi: 10.1016/j.chroma.2010.12.068
   Web of Science ®Google Scholar
• Newman DJ, Cragg GM. 2007. Natural products as sources of new drugs over the last 25 years. J. Nat. Prod. 70:461–477. doi: 10.1021/np068054v
   PubMed Web of Science ®Google Scholar
• Newman DJ, Cragg GM. 2012. Natural products as sources of new drugs over the 30 years from 1981 to 2010. J. Nat. Prod. 75:311–335. doi: 10.1021/np200906s
   PubMed Web of Science ®Google Scholar
• Nicholson TP, Rudd BA, Dawson M, Lazarus CM, Simpson TJ, Cox RJ. 2001. Design and utility of oligo nucleotide gene probes for fungal polyketide synthases. Chem Biol. 8:157–178. doi: 10.1016/S1074-5521(00)90064-4
   PubMed Web of Science ®Google Scholar
• Nielsen KF, Mansson M, Rank C, Frisvad JC, Larsen TO. 2011. Dereplication of Microbial Natural Products by LC-DAD-TOFMS. J. Nat. Prod. 74:2338–2348. doi: 10.1021/np200254t
   PubMed Web of Science ®Google Scholar
• Padhi S, Tayung K. 2013. Antimicrobial activity and molecular characterization of an endophytic fungus, Quambalaria sp. isolated from Ipomoea carnea. Ann Microbiol. 63:793–800. doi: 10.1007/s13213-012-0534-4
   Web of Science ®Google Scholar
• Rajauria G, Abu-Ghannam N. 2013. Isolation and partial characterization of bioactive fucoxanthin from Himanthalia elongate brown seaweed: a TLC-based approach. International Journal of Analytical Chemistry. http://dx.doi.org/10.1155/2013/802573http://dx.doi.org/10.1155/2013/802573
   Google Scholar
• Rakshith D, Santosh P, Satish S. 2013a. Isolation and characterization of antimicrobial metabolite producing endophytic Phomopsis sp. from Ficus pumila Linn. (Moraceae). Inter. J. Chem. Anal. Sci. 4:156–160. doi: 10.1016/j.ijcas.2013.08.006
   Google Scholar
• Rakshith D, Santosh P, Tarman K, Gurudatt DM, Satish S. 2013b. Dereplication strategy for antimicrobial metabolite using thin-layer chromatography–bioautography and LC–PDA–MS analysis. J. Planar. Chromatogr. – Mod. TLC. 26(6):470–474. doi: 10.1556/JPC.26.2013.6.2
   Web of Science ®Google Scholar
• Rao HCY, Santosh P, Rakshith D, Satish S. 2014. Molecular characterization of an endophytic Phomopsis liquidambaris CBR-15 from Cryptolepis buchanani Roem. and impact of culture media on biosynthesis of antimicrobial metabolites. 3Biotech. doi:10.1007/s13205-014-0204-2
   Google Scholar
• Rateb ME, Ebel R. 2011. Secondary metabolites of fungi from marine habitats. Nat. Prod. Rep. 28:290–344. doi: 10.1039/c0np00061b
   PubMed Web of Science ®Google Scholar
• Sadrati N, Daoud H, Zerroug A, Dahamna S, Bouharati S. 2013. Screening of antimicrobial and antioxidant secondary metabolites from endophytic fungi isolated from wheat (Triticum durum). J. Plant Prot. Res. 53(2):128–136. doi: 10.2478/jppr-2013-0019
   Google Scholar
• Scherlach K, Hertweck C. 2009. Triggering cryptic natural product biosynthesis in microorganisms. Org Biomol Chem. 7: 1753–1760. doi: 10.1039/b821578b
   PubMed Web of Science ®Google Scholar
• Schumann J, Hertweck C. 2006. Advances in cloning, functional analysis and heterologous expression of fungal polyketide synthase genes. Journal of Biotechnology. 124:690–703. doi: 10.1016/j.jbiotec.2006.03.046
   PubMed Web of Science ®Google Scholar
• Tong WY, Zaadah NJ, Nurhaida, Tan WN, Melati K, Latiffah Z, Darah I. 2014. Antimicrobial activity of Phomopsis sp. ED2 residing in medicinal plant Orthosiphon stamineus Benth. Annu Rev Res Biol. 4(9). doi: 10.9734/ARRB/2014/8060
   Google Scholar
• Valgas C, de Souza SM, Smania EFA, Smania AJ. 2007. Screening methods to determine antibacterial activity of natural products. Braz J Microbiol. 38:369–380. doi: 10.1590/S1517-83822007000200034
   Web of Science ®Google Scholar
• Wang LW, Xu G, Wang JY, Su ZZ, Lin FC, Zhang CL, Kubicek CP. 2012. Bioactive metabolites from Phoma species, an endophytic fungus from the Chinese medicinal plant Arisaema erubescens. Appl Microbiol Biotechnol. 93:1231–1239. doi: 10.1007/s00253-011-3472-3
   PubMed Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S, Taylor JW. 1990. PCR Protocols: A Guide to Methods and Applications Amplification and direct sequencing of fungal genes for phylogenetics. In: Innis M, Gelfand DH, Sninsky JJ, White TJ, editor. San Diego: Academic Press; p. 315–322.
   Google Scholar
• Zhao J, Yang N, Zeng R. 2008. Phylogenetic analysis of type I polyketide synthase and non-ribosomal peptide synthetase genes in Antarctic sediment. Extremophiles. 12:97–105. doi: 10.1007/s00792-007-0107-9
   PubMed Web of Science ®Google Scholar
• Zhao XQ. 2011. Genome-Based Studies of Marine Microorganisms to Maximize the Diversity of Natural Products Discovery for Medical Treatments. Evid. Based Complement. Alternat. Med. doi:10.1155/2011/384572
   Web of Science ®Google Scholar