Identification and validation of seven RNA binding protein genes as a prognostic signature in oral cavity squamous cell carcinoma

References

• Nör JE, Gutkind JS. Head and Neck Cancer in the New Era of Precision Medicine. J Dent Res. 2018;97(6):601–602.
   PubMed Web of Science ®Google Scholar
• Chinn SB, Myers JN. Oral Cavity Carcinoma: current Management, Controversies, and Future Directions. J Clin Oncol. 2015;33(29):3269–3276.
   PubMed Web of Science ®Google Scholar
• Pfister DG, Spencer S, Brizel DM, et al. Head and neck cancers, Version 2.2014. Clinical practice guidelines in oncology. J Natl Compr Canc Netw. 2014;12(10):1454–1487.
   PubMedGoogle Scholar
• Chi AC, Day TA, Neville BW. Oral cavity and oropharyngeal squamous cell carcinoma–an update. CA Cancer J Clin. 2015;65(5):401–421.
   PubMed Web of Science ®Google Scholar
• Gerstberger S, Hafner M, Tuschl T. A census of human RNA-binding proteins. Nat Rev Genet. 2014;15(12):829–845.
   PubMed Web of Science ®Google Scholar
• Wang ZL, Li B, Luo YX, et al. Comprehensive Genomic Characterization of RNA-Binding Proteins across Human Cancers. Cell Rep. 2018;22(1):286–298.
   PubMed Web of Science ®Google Scholar
• Lukong KE, Chang KW, Khandjian EW, et al. RNA-binding proteins in human genetic disease. Trends Genet. 2008;24(8):416–425.
   PubMed Web of Science ®Google Scholar
• Busà R, Paronetto MP, Farini D, et al. The RNA-binding protein Sam68 contributes to proliferation and survival of human prostate cancer cells. Oncogene. 2007;26(30):4372–4382.
   PubMed Web of Science ®Google Scholar
• Zhang H, Wang Y, Dou J, et al. Acetylation of AGO2 promotes cancer progression by increasing oncogenic miR-19b biogenesis. Oncogene. 2019;38(9):1410–1431.
   PubMed Web of Science ®Google Scholar
• Tu HC, Schwitalla S, Qian Z, et al. LIN28 cooperates with WNT signaling to drive invasive intestinal and colorectal adenocarcinoma in mice and humans. Genes Dev. 2015;29(10):1074–1086.
   PubMed Web of Science ®Google Scholar
• Liao JY, Yang B, Zhang YC, et al. EuRBPDB: a comprehensive resource for annotation, functional and oncological investigation of eukaryotic RNA binding proteins (RBPs). Nucleic Acids Res. 2020;48(D1):D307–D13.
   PubMed Web of Science ®Google Scholar
• Ritchie ME, Phipson B, Wu D, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43(7):e47.
   PubMed Web of Science ®Google Scholar
• Wu T, Hu E, Xu S, et al. clusterProfiler 4.0: a universal enrichment tool for interpreting omics data. Innovation. 2021;100141.
   Google Scholar
• Hou C, Cai H, Zhu Y, et al. Development and Validation of Autophagy-Related Gene Signature and Nomogram for Predicting Survival in Oral Squamous Cell Carcinoma. Front Oncol. 2020;10:558596.
   PubMed Web of Science ®Google Scholar
• Miao T, Si Q, Wei Y, et al. Identification and validation of seven prognostic long non-coding RNAs in oral squamous cell carcinoma. Oncol Lett. 2020;20(1):939–946.
   PubMed Web of Science ®Google Scholar
• Kechavarzi B, Janga SC. Dissecting the expression landscape of RNA-binding proteins in human cancers. Genome Biol. 2014;15(1):R14.
   PubMed Web of Science ®Google Scholar
• Almangush A, Makitie AA, Triantafyllou A, et al. Staging and grading of oral squamous cell carcinoma: an update. Oral Oncol. 2020;107:104799.
   PubMed Web of Science ®Google Scholar
• Wu J, Liu S, Liu G, et al. Identification and functional analysis of 9p24 amplified genes in human breast cancer. Oncogene. 2012;31(3):333–341.
   PubMed Web of Science ®Google Scholar
• Qu J, Zhang L, Li L, et al. miR-148b Functions as a Tumor Suppressor by Targeting Endoplasmic Reticulum Metallo Protease 1 in Human Endometrial Cancer Cells. Oncol Res. 2018;27(1):81–88.
   PubMed Web of Science ®Google Scholar
• Yang Q, Chu W, Yang W, et al. Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis. Front Genet. 2020;11:540094.
   PubMed Web of Science ®Google Scholar
• Sakkal S, Miller S, Apostolopoulos V, et al. Eosinophils in Cancer: favourable or Unfavourable? Curr Med Chem. 2016;23(7):650–666.
   PubMed Web of Science ®Google Scholar
• Trulson A, Nilsson S, Venge P. The eosinophil granule proteins in serum, but not the oxidative metabolism of the blood eosinophils, are increased in cancer. Br J Haematol. 1997;98(2):312–314.
   PubMed Web of Science ®Google Scholar
• FV, Oliveira DT, RC DEF, Pereira MC, Dos Santos PODEL. Effect of eosinophil cationic protein on human oral squamous carcinoma cell viability. Mol Clin Oncol. 2015;3(2):353–356.
   PubMed Web of Science ®Google Scholar
• Chen KJ, Chiang TC, Yu CJ, et al. Cooperative recruitment of Arl4A and Pak1 to the plasma membrane contributes to sustained Pak1 activation for cell migration. J Cell Sci. 2020;133:3.
   Web of Science ®Google Scholar
• Lin SJ, Huang CF, Wu TS, et al. Arl4D-EB1 interaction promotes centrosomal recruitment of EB1 and microtubule growth. Mol Biol Cell. 2020;31(21):2348–2362.
   PubMed Web of Science ®Google Scholar
• Yamauchi J, Miyamoto Y, Torii T, et al. Valproic acid-inducible Arl4D and cytohesin-2/ARNO, acting through the downstream Arf6, regulate neurite outgrowth in N1E-115 cells. Exp Cell Res. 2009;315(12):2043–2052.
   PubMed Web of Science ®Google Scholar
• Zhou RS, Zhang EX, Sun QF, et al. Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue. BMC Cancer. 2019;19(1):779.
   PubMed Web of Science ®Google Scholar
• Chen L, Long X, Duan S, et al. CSRP2 suppresses colorectal cancer progression via p130Cas/Rac1 axis-meditated ERK, PAK, and HIPPO signaling pathways. Theranostics. 2020;10(24):11063–11079.
   PubMed Web of Science ®Google Scholar
• Deng R, Zhang HL, Huang JH, et al. MAPK1/3 kinase-dependent ULK1 degradation attenuates mitophagy and promotes breast cancer bone metastasis. Autophagy. 2020. p. 1–19. DOI: 10.1080/15548627.2020.1850609
   Google Scholar
• Chang CF, Islam A, Liu PF, et al. Capsaicin acts through tNOX (ENOX2) to induce autophagic apoptosis in p53-mutated HSC-3 cells but autophagy in p53-functional SAS oral cancer cells. Am J Cancer Res. 2020;10(10):3230–3247.
   PubMed Web of Science ®Google Scholar
• Wu X, Liu JM, Song HH, et al. Aurora-B knockdown inhibits osteosarcoma metastasis by inducing autophagy via the mTOR/ULK1 pathway. Cancer Cell Int. 2020;20(1):575.
   PubMed Web of Science ®Google Scholar
• Minagawa K, Yamamoto K, Nishikawa S, et al. Deregulation of a possible tumour suppressor gene, ZC3H12D, by translocation of IGK@ in transformed follicular lymphoma with t(2;6)(p12;q25). Br J Haematol. 2007;139(1):161–163.
   PubMed Web of Science ®Google Scholar
• Wang M, Vikis HG, Wang Y, et al. Identification of a novel tumor suppressor gene p34 on human chromosome 6q25.1. Cancer Res. 2007;67(1):93–99.
   PubMed Web of Science ®Google Scholar
• Wei J, Kishton RJ, Angel M, et al. Ribosomal Proteins Regulate MHC Class I Peptide Generation for Immunosurveillance. Mol Cell. 2019;73(6):1162–73 e5.
   PubMed Web of Science ®Google Scholar
• Iasonos A, Schrag D, Raj GV, et al. How to build and interpret a nomogram for cancer prognosis. J Clin Oncol. 2008;26(8):1364–1370.
   PubMed Web of Science ®Google Scholar
• Sternberg CN. Are nomograms better than currently available stage groupings for bladder cancer? J Clin Oncol. 2006;24(24):3819–3820.
   PubMed Web of Science ®Google Scholar
• Zhao Y, Huang J, Chen J. The integration of differentially expressed genes based on multiple microarray datasets for prediction of the prognosis in oral squamous cell carcinoma. Bioengineered. 2021;12(1):3309–3321.
   PubMed Web of Science ®Google Scholar