Large-scale quantitative genomics analyzes the circRNA expression profile and identifies the key circRNA in regulating cell proliferation during the proliferation phase of rat LR

References

• Zimmermann A. Regulation of liver regeneration. Nephrol Dial Transplant. 2004;19(4):iv6–10.
   PubMedGoogle Scholar
• Michalopoulos GK, DeFrances M. Liver regeneration. Adv Biochem Eng Biotechnol. 2005;93:101–134.
   PubMed Web of Science ®Google Scholar
• Yuceturk H, Yagmurdur MC, Gur G, et al. Role of heparin on TNF-alpha and IL-6 levels in liver regeneration after partial hepatic resection. Eur Surg Res. 2007;39:216–221.
   PubMed Web of Science ®Google Scholar
• Adamek B, Zalewska-Ziob M, Strzelczyk JK, et al. Hepatocyte growth factor and epidermal growth factor activity during later stages of rat liver regeneration upon interferon alpha-2b influence. Clin Exp Hepatol. 2017;3:9–15.
   PubMed Web of Science ®Google Scholar
• Memczak S, Jens M, Elefsinioti A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency. Nature 2013;495:333–338.
   PubMed Web of Science ®Google Scholar
• Fanale D, Taverna S, Russo A, et al. Circular RNA in Exosomes. Adv Exp Med Biol. 2018;1087:109–117.
   PubMed Web of Science ®Google Scholar
• Xu Z, Li P, Fan L, et al. The potential role of circRNA in tumor immunity regulation and immunotherapy. Front Immunol. 2018;9:9.
   PubMed Web of Science ®Google Scholar
• Li L, Guo J, Chen Y, et al. Comprehensive circRNA expression profile and selection of key circRNAs during priming phase of rat liver regeneration. BMC Genomics. 2017;18:80.
   PubMed Web of Science ®Google Scholar
• Higgins GA. Experimental pathology of the liver: restoration of the liver of the white rat following partial surgical removal. Arch Pathol 1931;12:186–202.
   Google Scholar
• John B, Enright AJ, Aravin A, et al. Human MicroRNA targets. PLoS Biol. 2004;2:e363.
   PubMed Web of Science ®Google Scholar
• Fromm B, Billipp T, Peck LE, et al. A uniform system for the annotation of vertebrate microRNA genes and the evolution of the human microRNAome. Annu Rev Genet. 2015;49:213–242.
   PubMed Web of Science ®Google Scholar
• Shi Y, Yang F, Wei S, et al. Identification of key genes affecting results of hyperthermia in osteosarcoma based on integrative ChIP-Seq/TargetScan analysis. Med Sci Monit. 2017;23:2042–2048.
   PubMed Web of Science ®Google Scholar
• Huang DW, Sherman BT, Tan Q, et al. DAVID bioinformatics resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res. 2007;35:W169–W175.
   PubMed Web of Science ®Google Scholar
• Hansen TB, Jensen TI, Clausen BH, et al. Natural RNA circles function as efficient microRNA sponges. Nature 2013;495:384–388.
   PubMed Web of Science ®Google Scholar
• Inoue K. [MicroRNA function in animal development]. Tanpakushitsu Kakusan Koso. 2007;52:197–204. Japanese.
   PubMedGoogle Scholar
• Motawi TK, Mohamed MR, Shahin NN, et al. Time-course expression profile and diagnostic potential of a miRNA panel in exosomes and total serum in acute liver injury. Int J Biochem Cell Biol. 2018;100:11–21.
   PubMed Web of Science ®Google Scholar
• Lu J, Chen C, Hao L, et al. MiRNA expression profile of ionizing radiation-induced liver injury in mouse using deep sequencing. Cell Biol Int. 2016;40:873–886.
   PubMed Web of Science ®Google Scholar
• Yu ZY, Bai YN, Luo LX, et al. Expression of microRNA-150 targeting vascular endothelial growth factor-A is downregulated under hypoxia during liver regeneration. Mol Med Rep. 2013;8:287–293.
   PubMed Web of Science ®Google Scholar
• Danan M, Schwartz S, Edelheit S, et al. Transcriptome-wide discovery of circular RNAs in Archaea. Nucleic Acids Res. 2012;40:3131–3142.
   PubMed Web of Science ®Google Scholar
• Kramer MC, Liang D, Tatomer DC, et al. Combinatorial control of Drosophila circular RNA expression by intronic repeats, hnRNPs, and SR proteins. Genes Dev. 2015;29:2168–2182.
   PubMed Web of Science ®Google Scholar
• Cao Y, You S, Yao Y, et al. Expression profiles of circular RNAs in sheep skeletal muscle. Asian-Australas J Anim Sci. 2018;31:1550–1557.
   PubMed Web of Science ®Google Scholar
• Huang M, Shen Y, Mao H, et al. Circular RNA expression profiles in the porcine liver of two distinct phenotype pig breeds. Asian-Australas J Anim Sci. 2018;31:812–819.
   PubMed Web of Science ®Google Scholar
• Werfel S, Nothjunge S, Schwarzmayr T, et al. Characterization of circular RNAs in human, mouse and rat hearts. J Mol Cell Cardiol. 2016;98:103–107.
   PubMed Web of Science ®Google Scholar
• Du WW, Yang W, Liu E, et al. Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2. Nucleic Acids Res. 2016;44:2846–2858.
   PubMed Web of Science ®Google Scholar
• Michalopoulos GK. Advances in liver regeneration. Expert Rev Gastroenterol Hepatol. 2014;8:897–907.
   PubMed Web of Science ®Google Scholar
• Fausto N, Campbell JS, Riehle KJ. Liver regeneration. Hepatology. 2006;43:S45–S53.
   PubMed Web of Science ®Google Scholar
• Kunimoto K, Nojima H, Yamazaki Y, et al. Involvement of IQGAP3, a regulator of Ras/ERK-related cascade, in hepatocyte proliferation in mouse liver regeneration and development. J Cell Physiol. 2009;220:621–631.
   PubMed Web of Science ®Google Scholar
• Stepniak E, Ricci R, Eferl R, et al. c-Jun/AP-1 controls liver regeneration by repressing p53/p21 and p38 MAPK activity. Genes Dev. 2006;20:2306–2314.
   PubMed Web of Science ®Google Scholar
• Phesse TJ, Buchert M, Stuart E, et al. Partial inhibition of gp130-Jak-Stat3 signaling prevents Wnt-beta-catenin-mediated intestinal tumor growth and regeneration. Sci Signal. 2014;7:ra92.
   PubMed Web of Science ®Google Scholar
• Ozaki M. [Role of jak/STAT3 and PI3-K/Akt pathways in liver injury and regeneration]. Seikagaku. 2008;80:399–408. Japanese.
   PubMedGoogle Scholar
• Lee SC, Jeong HJ, Lee SK, et al. Hypoxic conditioned medium from human adipose-derived stem cells promotes mouse liver regeneration through JAK/STAT3 signaling. Stem Cells Transl Med. 2016;5:816–825.
   PubMed Web of Science ®Google Scholar
• Chaveles I, Zaravinos A, Habeos IG, et al. MicroRNA profiling in murine liver after partial hepatectomy. Int J Mol Med. 2012;29:747–755.
   PubMed Web of Science ®Google Scholar
• Raschzok N, Werner W, Sallmon H, et al. Temporal expression profiles indicate a primary function for microRNA during the peak of DNA replication after rat partial hepatectomy. Am J Physiol Regul Integr Comp Physiol. 2011;300:R1363–R1372.
   PubMed Web of Science ®Google Scholar
• Geng X, Chang C, Zang X, et al. Integrative proteomic and microRNA analysis of the priming phase during rat liver regeneration. Gene 2016;575:224–232.
   PubMed Web of Science ®Google Scholar
• Kim J, Hyun J, Wang S, et al. MicroRNA-378 is involved in hedgehog-driven epithelial-to-mesenchymal transition in hepatocytes of regenerating liver. Cell Death Dis. 2018;9:721.
   PubMed Web of Science ®Google Scholar
• Song G, Sharma AD, Roll GR, et al. MicroRNAs control hepatocyte proliferation during liver regeneration. Hepatology. 2010;51:1735–1743.
   PubMed Web of Science ®Google Scholar
• Lee NK, Skinner JP, Zajac JD, et al. Ornithine decarboxylase is upregulated by the androgen receptor in skeletal muscle and regulates myoblast proliferation. Am J Physiol Endocrinol Metab. 2011;301:E172–E179.
   PubMed Web of Science ®Google Scholar
• Sang Y, Chen B, Song X, et al. circRNA_0025202 regulates tamoxifen sensitivity and tumor progression via regulating the miR-182-5p/FOXO3a axis in breast cancer. Mol Ther. 2019. [Epub ahead of print].
   Web of Science ®Google Scholar
• Schug J, McKenna LB, Walton G, et al. Dynamic recruitment of microRNAs to their mRNA targets in the regenerating liver. BMC Genomics. 2013;14:264.
   PubMed Web of Science ®Google Scholar
• Tessitore A, Cicciarelli G, Del Vecchio F, et al. MicroRNA expression analysis in high fat diet-induced NAFLD-NASH-HCC progression: study on C57BL/6J mice. BMC Cancer. 2016;16:3.
   PubMed Web of Science ®Google Scholar
• Yang Y, Lin X, Lu X, et al. Interferon-microRNA signalling drives liver precancerous lesion formation and hepatocarcinogenesis. Gut 2016;65:1186–1201.
   PubMed Web of Science ®Google Scholar
• He T, Weintraub NL, Goswami PC, et al. Redox factor-1 contributes to the regulation of progression from G0/G1 to S by PDGF in vascular smooth muscle cells. Am J Physiol Heart Circ Physiol. 2003;285:H804–H812.
   PubMed Web of Science ®Google Scholar
• Assy N, Spira G, Paizi M, et al. Effect of vascular endothelial growth factor on hepatic regenerative activity following partial hepatectomy in rats. J Hepatol. 1999;30:911–915.
   PubMed Web of Science ®Google Scholar