Evolution and transmission of a conjugative plasmid encoding both ciprofloxacin and ceftriaxone resistance in Salmonella

References

• Gomez TM, Motarjemi Y, Miyagawa S, et al. Foodborne salmonellosis. World Health Stat Q. 1997;50:81–89.
   PubMedGoogle Scholar
• Hohmann EL. Nontyphoidal salmonellosis. Clin Infect Dis. 2001;32:263–269. DOI:10.1086/318457.
   PubMed Web of Science ®Google Scholar
• Multidrug-resistant Salmonella serotype Typhimurium–United States, 1996. MMWR (Morbidity and Mortality Weekly Report). 1997, vol. 46, p. 308-310.
   Google Scholar
• Markogiannakis A, Tassios PT, Lambiri M, et al. Multiple clones within multidrug-resistant Salmonella enterica serotype Typhimurium phage type DT104. The Greek Nontyphoidal Salmonella Study Group. J Clin Microbiol. 2000;38:1269–1271.
   PubMed Web of Science ®Google Scholar
• Glynn MK, Bopp C, Dewitt W, et al. Emergence of multidrug-resistant Salmonella enterica serotype typhimurium DT104 infections in the United States. N Engl J Med. 1998;338:1333–1339. DOI:10.1056/NEJM199805073381901.
   PubMed Web of Science ®Google Scholar
• Leekitcharoenphon P, Hendriksen RS, Le Hello S, et al. Global genomic epidemiology of Salmonella enterica Serovar Typhimurium DT104. Appl Environ Microbiol. 2016;82:2516–2526. DOI:10.1128/AEM.03821-15.
   PubMed Web of Science ®Google Scholar
• Zhao S, Blickenstaff K, Glenn A, et al. beta-Lactam resistance in salmonella strains isolated from retail meats in the United States by the National Antimicrobial Resistance Monitoring System between 2002 and 2006. Appl Environ Microbiol. 2009;75:7624–7630. DOI:10.1128/AEM.01158-09.
   PubMed Web of Science ®Google Scholar
• NARMS. National Antimicrobial Resistance Monitoring System (NARMS): 2014 Human isolates surveillance report; 2014. http://www.cdc.gov/narms/pdf/2014-annual-report-narms-508c.pdf.
   Google Scholar
• Wong MH, Yan M, Chan EW, et al. Emergence of clinical Salmonella enterica serovar Typhimurium isolates with concurrent resistance to ciprofloxacin, ceftriaxone, and azithromycin. Antimicrob Agents Chemother. 2014;58:3752–3756. DOI:10.1128/AAC.02770-13.
   PubMed Web of Science ®Google Scholar
• Ho P, Lo WU, Yeung MK, et al. Dissemination of pHK01-like incompatibility group IncFII plasmids encoding CTX-M-14 in Escherichia coli from human and animal sources. Vet Microbiol. 2012;158:172–179. doi: 10.1016/j.vetmic.2012.02.004
   PubMed Web of Science ®Google Scholar
• Hooper DC. Emerging mechanisms of fluoroquinolone resistance. Emerg Infect Dis. 2001;7:337–341. DOI:10.3201/eid0702.700337 doi: 10.3201/eid0702.010239
   PubMed Web of Science ®Google Scholar
• Chen S, Zhao S, White DG, et al. Characterization of multiple-antimicrobial-resistant Salmonella serovars isolated from retail meats. Appl Environ Microbiol. 2004;70:1–7. doi: 10.1128/AEM.70.1.1-7.2004
   PubMed Web of Science ®Google Scholar
• Szmolka A, Fortini D, Villa L, et al. First report on IncN plasmid-mediated quinolone resistance gene qnrS1 in porcine Escherichia coli in Europe. Microb Drug Resist. 2011;17:567–573. DOI:10.1089/mdr.2011.0068.
   PubMed Web of Science ®Google Scholar
• Gunell M, Webber MA, Kotilainen P, et al. Mechanisms of resistance in nontyphoidal Salmonella enterica strains exhibiting a nonclassical quinolone resistance phenotype. Antimicrob Agents Chemother. 2009;53:3832–3836. DOI:10.1128/AAC.00121-09.
   PubMed Web of Science ®Google Scholar
• Ferrari R, Galiana A, Cremades R, et al. Plasmid-mediated quinolone resistance by genes qnrA1 and qnrB19 in Salmonella strains isolated in Brazil. J Infect Dev Ctries. 2011;5:496–498. doi: 10.3855/jidc.1735
   PubMed Web of Science ®Google Scholar
• Ceyssens PJ, Mattheus W, Vanhoof R, et al. Trends in serotype distribution and antimicrobial susceptibility in Salmonella enterica isolates from humans in Belgium, 2009 to 2013. Antimicrob Agents Chemother. 2015;59:544–552. DOI:10.1128/AAC.04203-14.
   PubMed Web of Science ®Google Scholar
• Abgottspon H, Zurfluh K, Nuesch-Inderbinen M, et al. Quinolone resistance mechanisms in Salmonella enterica serovars Hadar, Kentucky, Virchow, Schwarzengrund, and 4,5,12:i:-, isolated from humans in Switzerland, and identification of a novel qnrD variant, qnrD2, in S. Hadar. Antimicrob Agents Chemother. 2014;58:3560–3563. DOI:10.1128/AAC.02404-14.
   PubMed Web of Science ®Google Scholar
• Nuesch-Inderbinen M, Abgottspon H, Sagesser G, et al. Antimicrobial susceptibility of travel-related Salmonella enterica serovar Typhi isolates detected in Switzerland (2002-2013) and molecular characterization of quinolone resistant isolates. BMC Infect Dis. 2015;15:212. DOI:10.1186/s12879-015-0948-2.
   PubMed Web of Science ®Google Scholar
• Wong MH, Chan EW, Liu LZ, et al. PMQR genes oqxAB and aac(6’)Ib-cr accelerate the development of fluoroquinolone resistance in Salmonella typhimurium. Front Microbiol. 2014;5:521. DOI:10.3389/fmicb.2014.00521.
   PubMed Web of Science ®Google Scholar
• Lin D, Chen K, Wai-Chi Chan E, et al. Increasing prevalence of ciprofloxacin-resistant food-borne Salmonella strains harboring multiple PMQR elements but not target gene mutations. Sci Rep. 2015;5:14754. DOI:10.1038/srep14754.
   PubMed Web of Science ®Google Scholar
• Li R, Lin D, Chen K, et al. First detection of AmpC beta-lactamase bla(CMY-2) on a conjugative IncA/C plasmid in a Vibrio parahaemolyticus isolate of food origin. Antimicrob Agents Chemother. 2015;59:4106–4111. DOI:10.1128/AAC.05008-14.
   PubMed Web of Science ®Google Scholar
• Chen K, Dong N, Zhao S, et al. Identification and characterization of conjugative plasmids that encode ciprofloxacin resistance in Salmonella. Antimicrob Agents Chemother. 2018;62:00575–00518.
   Web of Science ®Google Scholar
• Wang Y, Zhang R, Li J, et al. Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production. Nat Microbiol. 2017;2:16260. doi: 10.1038/nmicrobiol.2016.260
   PubMed Web of Science ®Google Scholar
• Chen S, Cui S, McDermott PF, et al. Contribution of target gene mutations and efflux to decreased susceptibility of Salmonella enterica serovar Typhimurium to fluoroquinolones and other antimicrobials. Antimicrob Agents Chemother. 2007;51:535–542. DOI:10.1128/AAC.00600-06.
   PubMed Web of Science ®Google Scholar
• Kim J, Han X, Bae J, et al. Prevalence of plasmid-mediated quinolone resistance (PMQR) genes in non-typhoidal Salmonella strains with resistance and reduced susceptibility to fluoroquinolones from human clinical cases in Alberta, Canada, 2009-13. J Antimicrob Chemother. 2016;71:2988–2990. DOI:10.1093/jac/dkw232.
   PubMed Web of Science ®Google Scholar
• Ferrari R, Galiana A, Cremades R, et al. Plasmid-mediated quinolone resistance (PMQR) and mutations in the topoisomerase genes of Salmonella enterica strains from Brazil. Braz J Microbiol. 2013;44:657–662. DOI:10.1590/S1517-83822013000200046.
   PubMed Web of Science ®Google Scholar
• Pribul BR, Festivo ML, Rodrigues MS, et al. Characteristics of quinolone resistance in Salmonella spp. isolates from the food chain in Brazil. Front Microbiol. 2017;8:299, DOI:10.3389/fmicb.2017.00299.
   PubMed Web of Science ®Google Scholar
• Wong MH-Y, Chan EW-C, Chen S. IS 26-mediated formation of a virulence and resistance plasmid in Salmonella enteritidis. J Antimicrob Chemother. 2017;72:2750–2754. doi: 10.1093/jac/dkx238
   PubMed Web of Science ®Google Scholar
• Xie M, Li R, Liu Z, et al. Recombination of plasmids in a carbapenem-resistant NDM-5-producing clinical Escherichia coli isolate. J Antimicrob Chemother. 2018;73:1230–1234. doi: 10.1093/jac/dkx540
   PubMed Web of Science ®Google Scholar
• Garcia A, Navarro F, Mirã E, et al. Acquisition and diffusion of bla CTX-M-9 gene by R478-IncHI2 derivative plasmids. FEMS Microbiol Lett. 2007;271:71–77. DOI:10.1111/j.1574-6968.2007.00695.x.
   PubMed Web of Science ®Google Scholar
• Meyer R. Replication and conjugative mobilization of broad host-range IncQ plasmids. Plasmid. 2009;62:57–70. DOI:10.1016/j.plasmid.2009.05.001.
   PubMed Web of Science ®Google Scholar
• Sun J, Yang R-S, Zhang Q, et al. Co-transfer of blaNDM-5 and mcr-1 by an IncX3-X4 hybrid plasmid in Escherichia coli. Nat Microbiol. 2016;1:16176. DOI:10.1038/nmicrobiol.2016.176.
   PubMed Web of Science ®Google Scholar
• CLSI. Performance standards for antimicrobial susceptibility testing, twenty-sixth informational supplement. CLSI document M100-S26. Wayne, PA: Clinical and Laboratory Standards Institute; 2016.
   Google Scholar
• Overbeek R, Olson R, Pusch GD, et al. The SEED and the rapid annotation of microbial genomes using subsystems technology (RAST). Nucleic Acids Res. 2014;42:D206–D214. DOI:10.1093/nar/gkt1226.
   PubMed Web of Science ®Google Scholar