Genetic characterization of a new candidate hemagglutinin subtype of influenza A viruses

References

• Tong S, Li Y, Rivailler P, et al. A distinct lineage of influenza A virus from bats. Proc Natl Acad Sci USA. 2012;109(11):4269–4274. doi:10.1073/pnas.1116200109
   PubMed Web of Science ®Google Scholar
• Tong S, Zhu X, Li Y, et al. New world bats harbor diverse influenza A viruses. PLoS Pathog. 2013;9(10):e1003657. doi:10.1371/journal.ppat.1003657
   PubMed Web of Science ®Google Scholar
• Fouchier RA, Munster V, Wallensten A, et al. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls. J Virol. 2005;79(5):2814–2822.
   PubMed Web of Science ®Google Scholar
• Baek YH, Pascua PN, Song MS, et al. Surveillance and characterization of low pathogenic H5 avian influenza viruses isolated from wild migratory birds in Korea. Virus Res. 2010;150(1-2):119–128. doi:10.1016/j.virusres.2010.03.002
   PubMed Web of Science ®Google Scholar
• Brown IH. Summary of avian influenza activity in Europe, Asia, and Africa, 2006-2009. Avian Dis. 2010;54(1 Suppl):187–193. doi:10.1637/8949-053109-Reg.1
   PubMed Web of Science ®Google Scholar
• Busquets N, Alba A, Napp S, et al. Influenza A virus subtypes in wild birds in north-eastern Spain (Catalonia). Virus Res. 2010;149(1):10–18. doi:10.1016/j.virusres.2009.12.005
   PubMed Web of Science ®Google Scholar
• Fereidouni SR, Werner O, Starick E, et al. Avian influenza virus monitoring in wintering waterbirds in Iran, 2003-2007. Virol J. 2010;7:43. doi:10.1186/1743-422X-7-43
   PubMed Web of Science ®Google Scholar
• Fouchier RA, Olsen B, Bestebroer TM, et al. Influenza A virus surveillance in wild birds in Northern Europe in 1999 and 2000. Avian Dis. 2003;47(3 Suppl):857–860. doi:10.1637/0005-2086-47.s3.857
   PubMedGoogle Scholar
• Henriques AM, Fagulha T, Barros SC, et al. Multiyear surveillance of influenza A virus in wild birds in Portugal. Avian Pathol. 2011;40(6):597–602. doi:10.1080/03079457.2011.618943
   PubMed Web of Science ®Google Scholar
• Hoye BJ, Munster VJ, Nishiura H, et al. Surveillance of wild birds for avian influenza virus. Emerg Infect Dis. 2010;16:1827–1834.
   PubMed Web of Science ®Google Scholar
• Kydyrmanov A, Sayatov M, Karamendin K, et al. Monitoring of influenza A viruses in wild bird populations in Kazakhstan in 2002-2009. Arch Virol. 2017;162(1):147–155. doi:10.1007/s00705-016-3076-4
   PubMed Web of Science ®Google Scholar
• Miller BJ. Why unprecedented bird flu outbreaks sweeping the world are concerning scientists. Nature. 2022;606(7912):18–19. doi:10.1038/d41586-022-01338-2
   PubMed Web of Science ®Google Scholar
• Kawaoka Y, Yamnikova S, Chambers TM, et al. Molecular characterization of a new hemagglutinin, subtype H14, of influenza A virus. Virology. 1990;179(2):759–767. doi:10.1016/0042-6822(90)90143-f
   PubMed Web of Science ®Google Scholar
• Fereidouni SR, Harder TC, Gaidet N, et al. Saving resources: avian influenza surveillance using pooled swab samples and reduced reaction volumes in real-time RT-PCR. J Virol Meth. 2012;186:119–125.
   PubMed Web of Science ®Google Scholar
• EC (European Commission). Commission Decision 2020/689/EC of 4 August 2006 approving a Diagnostic Manual for avian influenza as provided for in Council Directive 2005/94/EC; 2019. Available from: https://eur-lex.europa.eu/legal-content/EN/TXT/PDF/?uri = CELEX:32020R0689&from = en.
   Google Scholar
• Fereidouni SR, Starick E, Beer M, et al. Highly pathogenic avian influenza virus infection of mallards with homo- and heterosubtypic immunity induced by low pathogenic avian influenza viruses. PLoS One. 2009;4(8):e6706. doi:10.1371/journal.pone.0006706
   PubMed Web of Science ®Google Scholar
• Hoffmann E, Stech J, Guan Y, et al. Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol. 2001;146:2275–2289.
   PubMed Web of Science ®Google Scholar
• Kelley LA, Mezulis S, Yates CM, et al. The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc. 2015;10(6):845–858. doi:10.1038/nprot.2015.053
   PubMed Web of Science ®Google Scholar
• Gamblin SJ, Haire LF, Russell RJ, et al. The structure and receptor binding properties of the 1918 influenza hemagglutinin. Science. 2004;303(5665):1838–1842. doi:10.1126/science.1093155
   PubMed Web of Science ®Google Scholar
• Liu J, Stevens DJ, Haire LF, et al. Structures of receptor complexes formed by hemagglutinins from the Asian influenza pandemic of 1957. Proc Natl Acad Sci USA. 2009;106(40):17175–17180. doi:10.1073/pnas.0906849106
   PubMed Web of Science ®Google Scholar
• Martín J, Wharton SA, Lin YP, et al. Studies of the binding properties of influenza hemagglutinin receptor-site mutants. Virology. 1998;241(1):101–111. doi:10.1006/viro.1997.8958
   PubMed Web of Science ®Google Scholar
• Kandeil A, Gomaa MR, Shehata MM, et al. Isolation and characterization of a distinct influenza A virus from Egyptian bats. J Virol. 2019;93(2):e01059-18. doi:10.1128/JVI.01059-18
   PubMed Web of Science ®Google Scholar
• Lewis NS, Javakhishvili Z, Russell CA, et al. Avian influenza virus surveillance in wild birds in Georgia: 2009-2011. PLoS One. 2013;8(3):e58534. doi:10.1371/journal.pone.0058534
   PubMed Web of Science ®Google Scholar
• World Health Organization (WHO). A revision of the system of nomenclature for influenza viruses: a WHO memorandum. Bull World Health Organ. 1980;58(4):585–591.
   PubMed Web of Science ®Google Scholar
• Shriner SA, Root JJ, Lutman MW, et al. Surveillance for highly pathogenic H5 avian influenza virus in synanthropic wildlife associated with poultry farms during an acute outbreak. Sci Rep. 2016;6:36237. doi:10.1038/srep36237
   PubMed Web of Science ®Google Scholar
• Yamnikova SS, Gambarian AS, Aristova VA, et al. [A/H13 and A/H16 influenza viruses: different lines of one precursors]. Vopr Virusol. 2009;54(4):10–17. Russian. Abstract in English.
   Google Scholar
• Wan H, Perez DR. Amino acid 226 in the hemagglutinin of H9N2 influenza viruses determines cell tropism and replication in human airway epithelial cells. J Virol. 2007;81(10):5181–5191. doi:10.1128/JVI.02827-06
   PubMed Web of Science ®Google Scholar
• Zhou B, Donnelly ME, Scholes DT, et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human influenza a viruses. J Virol. 2009;83(19):10309–10313. doi:10.1128/JVI.01109-09
   PubMed Web of Science ®Google Scholar
• Keller MW, Rambo-Martin BL, Wilson MM, et al. Direct RNA sequencing of the coding complete influenza A virus genome. Sci Rep. 2018;8(1):14408. doi:10.1038/s41598-018-32615-8
   PubMedGoogle Scholar
• Panzarin V, Marciano S, Fortin A, et al. Redesign and validation of a real-time RT-PCR to improve surveillance for avian influenza viruses of the H9 subtype. Viruses. 2022;14(6):1263. doi:10.3390/v14061263
   PubMed Web of Science ®Google Scholar