3,171
Views
17
CrossRef citations to date
0
Altmetric
Review Article

Simulating the interaction of lipid membranes with polymer and ligand-coated nanoparticles

&
Pages 276-296 | Received 18 Jan 2016, Accepted 07 Apr 2016, Published online: 12 May 2016

References

  • M. Luckey, Membrane Structural Biology, Cambridge University Press, New York, 2014.
  • J.F. Nagle and S. Tristram-Nagle, Biochim. Biophys. Acta 1469 (2000) p.159.10.1016/S0304-4157(00)00016-2
  • O.S. Andersen and R.E. Koeppe, Ann. Rev. Biophys. Biomol. Struct. 36 (2007) p.107.10.1146/annurev.biophys.36.040306.132643
  • A.G. Lee, Trends Biochem. Sci. 36 (2011) p.493.10.1016/j.tibs.2011.06.007
  • G. van Meer, D.R. Voelker and G.W. Feigenson, Nat. Rev. Mol. Cell Biol. 9 (2008) p.112.10.1038/nrm2330
  • A. Shevchenko and K. Simons, Nat. Rev. Mol. Cell Biol. 11 (2010) p.593.10.1038/nrm2934
  • M.R. Wenk, Nat. Rev. Drug Discov. 4 (2005) p.594.10.1038/nrd1776
  • W.J. Lennarz, Lipid Metabolism in the Bacteria in Advances in Lipid Research, Vol. 4, P. Rodolfo and K. David, eds., Elsevier, New York, 1966, p.175.
  • R.M. Epand and R.F. Epand, Biochim. Biophys. Acta Biomembr. 1788 (2009) p.289.10.1016/j.bbamem.2008.08.023
  • J.A. Lundbæk, A.M. Maer and O.S. Andersen, Biochemistry 36 (1997) p.5695.10.1021/bi9619841
  • J.A. Lundbæk, J. Phys. Condens. Matter 18 (2006) p.S1305.10.1088/0953-8984/18/28/S13
  • Y.-M. Zhang and C.O. Rock, Nat. Rev. Microbiol. 6 (2008) p.222–233.10.1038/nrmicro1839
  • N. Lewinski, V. Colvin and R. Drezek, Small 4 (2008) p.26.10.1002/(ISSN)1613-6829
  • S.J. Klaine, P.J.J. Alvarez, G.E. Batley, T.F. Fernandes, R.D. Handy, D.Y. Lyon, S. Mahendra, M.J. McLaughlin and J.R. Lead, Environ. Toxicol. Chem. 27 (2008) p.1825.10.1897/08-090.1
  • H.-M. Ding and Y.-Q. Ma, Small 11 (2015) p.1055.10.1002/smll.v11.9-10
  • A.E. Nel, L. Mädler, D. Velegol, T. Xia, E.M.V. Hoek, P. Somasundaran, F. Klaessig, V. Castranova and M. Thompson, Nat. Mater. 8 (2009) p.543.10.1038/nmat2442
  • P.J.J. Alvarez, V. Colvin, J. Lead and V. Stone, ACS Nano 3 (2009) p.1616.10.1021/nn9006835
  • L. Monticelli, E. Salonen, P.C. Ke and I. Vattulainen, Soft Matter 5 (2009) p.4433.10.1039/b912310e
  • G. Rossi and L. Monticelli, J. Phys. Condens. Matter 26 (2014) p.503101.
  • Rossi, G. and Monticelli, L. BBA Biomembr., in press (2016). DOI: 10.1016/j.bbamem.2016.04.001
  • B.D. Chithrani and W.C.W. Chan, Nano Lett. 7 (2007) p.1542.10.1021/nl070363y
  • W. Jiang, B.Y.S. Kim, J.T. Rutka and W.C.W. Chan, Nat. Nanotechnol. 3 (2008) p.145.10.1038/nnano.2008.30
  • Y. Jiang, S. Huo, T. Mizuhara, R. Das, Y.-W. Lee, S. Hou, D.F. Moyano, B. Duncan, X.-J. Liang and V.M. Rotello, ACS Nano 9 (2015) p.9986.10.1021/acsnano.5b03521
  • B.D. Chithrani, A.A. Ghazani and W.C.W. Chan, Nano Lett. 6 (2006) p.662.10.1021/nl052396o
  • C.M. Sayes, J.D. Fortner, W. Guo, D. Lyon, A.M. Boyd, K.D. Ausman, Y.J. Tao, B. Sitharaman, L.J. Wilson, J.B. Hughes, J.L. West and V.L. Colvin, Nano Lett. 4 (2004) p.1881.10.1021/nl0489586
  • C.W. Lam, J.T. James, R. McCluskey and R.L. Hunter, Toxicol. Sci. 77 (2004) p.126.
  • A. Albanese and W.C.W. Chan, ACS Nano 5 (2011) p.5478.10.1021/nn2007496
  • N. Tripathy, T.-K. Hong, K.-T. Ha, H.-S. Jeong and Y.-B. Hahn, J. Hazard. Mater. 270 (2014) p.110.10.1016/j.jhazmat.2014.01.043
  • P.R. Leroueil, S.A. Berry, K. Duthie, G. Han, V.M. Rotello, D.Q. McNerny, J.R. Baker, B.G. Orr and M.M.B. Holl, Nano Lett. 8 (2008) p.420.10.1021/nl0722929
  • A. Verma and F. Stellacci, Small 6 (2010) p.12.10.1002/smll.v6:1
  • J. Lin and A. Alexander-Katz, ACS Nano 7 (2013) p.10799.10.1021/nn4040553
  • A. Mecke, I.J. Majoros, A.K. Patri, J.R. Baker, M.M.B. Holl and B.G. Orr, Langmuir 21 (2005) p.10348.10.1021/la050629l
  • S.P. Hong, P.R. Leroueil, E.K. Janus, J.L. Peters, M.M. Kober, M.T. Islam, B.G. Orr, J.R. Baker and M.M.B. Holl, Bioconjug. Chem. 17 (2006) p.728.10.1021/bc060077y
  • L.L. Rouhana, J.A. Jaber and J.B. Schlenoff, Langmuir 23 (2007) p.12799.10.1021/la702151q
  • R. Gref, M. Lück, P. Quellec, M. Marchand, E. Dellacherie, S. Harnisch, T. Blunk and R.H. Müller, Colloids Surf. B 18 (2000) p.301.10.1016/S0927-7765(99)00156-3
  • Q. He, J. Zhang, J. Shi, Z. Zhu, L. Zhang, W. Bu, L. Guo and Y. Chen, Biomaterials 31 (2010) p.1085.10.1016/j.biomaterials.2009.10.046
  • D.E. Owens and N.A. Peppas, Int. J. Pharm. 307 (2006) p.93.10.1016/j.ijpharm.2005.10.010
  • B.A. Kairdolf, M.C. Mancini, A.M. Smith and S. Nie, Anal. Chem. 80 (2008) p.3029.10.1021/ac800068q
  • E.C. Cho, J. Xie, P.A. Wurm and Y. Xia, Nano Lett. 9 (2009) p.1080.10.1021/nl803487r
  • A. Verma, O. Uzun, Y. Hu, Y. Hu, H.-S. Han, N. Watson, S. Chen, D.J. Irvine and F. Stellacci, Nat. Mater. 7 (2008) p.588.10.1038/nmat2202
  • P.R. Leroueil, S. Hong, A. Mecke, J.R. Baker Jr, B.G. Orr and M.M.B. Holl, Acc. Chem. Res. 40 (2007) p.335.10.1021/ar600012y
  • B. Wang, L. Zhang, S.C. Bae and S. Granick, Proc. Nat. Acad. Sci. 105 (2008) p.18171.10.1073/pnas.0807296105
  • X.H. Huang, I.H. El-Sayed, W. Qian and M.A. El-Sayed. J. Am. Chem. Soc. 128 (2006) p.2115.10.1021/ja057254a
  • L. Dykman and N. Khlebtsov, Chem. Soc. Rev. 41 (2012) p.2256.10.1039/C1CS15166E
  • O. Veiseh, J.W. Gunn and M. Zhang, Adv. Drug Delivery Rev. 62 (2010) p.284.10.1016/j.addr.2009.11.002
  • R. Xiong, K. Raemdonck, K. Peynshaert, I. Lentacker, I. De Cock, J. Demeester, S.C. De Smedt, A.G. Skirtach and K. Braeckmans, ACS Nano 8 (2014) p.6288.10.1021/nn5017742
  • E.C. Dreaden, M.A. Mackey, X. Huang, B. Kang and M.A. El-Sayed, Chem. Soc. Rev. 40 (2011) p.3391.10.1039/c0cs00180e
  • L.C. Kennedy, L.R. Bickford, N.A. Lewinski, A.J. Coughlin, Y. Hu, E.S. Day, J.L. West and R.A. Drezek, Small 7 (2011) p.169.10.1002/smll.v7.2
  • E.C. Dreaden, A.M. Alkilany, X. Huang, C.J. Murphy and M.A. El-Sayed, Chem. Soc. Rev. 41 (2012) p.2740.10.1039/C1CS15237H
  • S. Sabella, R.P. Carney, V. Brunetti, M.A. Malvindi, N. Al-Juffali, G. Vecchio, S.M. Janes, O.M. Bakr, R. Cingolani, F. Stellacci and P.P. Pompa, Nanoscale 6 (2014) p.7052.10.1039/c4nr01234h
  • F. Baletto and R. Ferrando, Rev. Mod. Phys. 77 (2005) p.371.10.1103/RevModPhys.77.371
  • L. Monticelli and D.P. Tieleman, Force Fields for Classical Molecular Dynamics in Biomolecular Simulations: Methods and Protocols, Vol. 924, L. Monticelli and E. Salonen, eds., Humana Press, New York, 2012, p.197.
  • S.J. Marrink and D.P. Tieleman, Chem. Soc. Rev. 42 (2013) p.6801.10.1039/c3cs60093a
  • E. Heikkilä, H. Martinez-Seara, A.A. Gurtovenko, M. Javanainen, I. Vattulainen and J. Akola, J. Phys. Chem. C 118 (2014) p.11131.10.1021/jp5024026
  • E. Heikkilä, H. Martinez-Seara, A.A. Gurtovenko, I. Vattulainen and J. Akola, BBA Biomembr. 2014 (1838) p.2852.
  • S.J. Marrink, H.J. Risselada, S. Yefimov, D.P. Tieleman and A.H. de Vries, J. Phys. Chem. B 111 (2007) p.7812.10.1021/jp071097f
  • L. Monticelli, S.K. Kandasamy, X. Periole, R.G. Larson, D.P. Tieleman and S.J. Marrink, J. Chem. Theory Comput. 4 (2008) p.819.10.1021/ct700324x
  • R.C. Van Lehn and A. Alexander-Katz, Soft Matter 10 (2014) p.648.10.1039/C3SM52329B
  • R.C. Van Lehn, M. Ricci, P.H.J. Silva, P. Andreozzi, J. Reguera, K. Voïtchovsky, F. Stellacci and A. Alexander-Katz, Nat. Commun. 5 (2014) p.4482.
  • R.C. Van Lehn and A. Alexander-Katz, Soft Matter 11 (2015) p.3165.10.1039/C5SM00287G
  • F. Simonelli, D. Bochicchio, R. Ferrando and G. Rossi, J. Phys. Chem. Lett. 6 (2015) p.3175.10.1021/acs.jpclett.5b01469
  • P. Gkeka, L. Sarkisov and P. Angelikopoulos, J. Phys. Chem. Lett. 4 (2013) p.1907.10.1021/jz400679z
  • P. Gkeka, P. Angelikopoulos, L. Sarkisov and Z. Cournia, PLoS Comput. Biol. 10 (2014) p.e1003917.10.1371/journal.pcbi.1003917
  • R.D. Groot and P.B. Warren, J. Chem. Phys. 107 (1997) p.4423.10.1063/1.474784
  • R.D. Groot and K.L. Rabone, Biophys. J. 81 (2001) p.725.10.1016/S0006-3495(01)75737-2
  • Y. Li, X. Li, Z. Li and H. Gao, Nanoscale 4 (2012) p.3768.10.1039/c2nr30379e
  • F. Alexis, E. Pridgen, L.K. Molnar and O.C. Farokhzad, Mol. Pharm. 5 (2008) p.505.10.1021/mp800051m
  • K.S. Soppimath, T.M. Aminabhavi, A.R. Kulkarni and W.E. Rudzinski, J. Control. Release 70 (2001) p.1.10.1016/S0168-3659(00)00339-4
  • M. Schulz, A. Olubummo and W.H. Binder, Soft Matter 8 (2012) p.4849.10.1039/c2sm06999g
  • C. Tribet and F. Vial, Soft Matter 4 (2008) p.68.10.1039/B708431P
  • C.V. Kelly, P.R. Leroueil, E.K. Nett, J.M. Wereszczynski, J.R. Baker Jr, B.G. Orr, M.M.B. Holl and I. Andricioaei, J. Phys. Chem. B 112 (2008) p.9337.10.1021/jp801377a
  • H. Yang and W.Y.J. Kao, J. Biomater. Sci. Polym. Ed. 17 (2006) p.3.10.1163/156856206774879171
  • W.-D. Tian and Y.-Q. Ma, Chem. Soc. Rev. 42 (2013) p.705.10.1039/C2CS35306G
  • M.-L. Ainalem, R.A. Campbell, S. Khalid, R.J. Gillams, A.R. Rennie and T. Nylander, J. Phys. Chem. B 114 (2010) p.7229.10.1021/jp9119809
  • A. Åkesson, T.K. Lind, R. Barker, A. Hughes and M. Cárdenas, Langmuir 28 (2012) p.13025.10.1021/la3027144
  • P.E.S. Smith, J.R. Brender, U.H.N. Dürr, J. Xu, D.G. Mullen, M.M.B. Holl and A. Ramamoorthy, J. Am. Chem. Soc. 132 (2010) p.8087.10.1021/ja101524z
  • C.V. Kelly, M.G. Liroff, L.D. Triplett, P.R. Leroueil, D.G. Mullen, J.M. Wallace, S. Meshinchi, J.R. Baker Jr, B.G. Orr and M.M.B. Holl, ACS Nano 3 (2009) p.1886.10.1021/nn900173e
  • C.C. Lee, J.A. MacKay, J.M.J. Fréchet and F.C. Szoka, Nat. Biotechnol. 23 (2005) p.1517.10.1038/nbt1171
  • H. Lee and R.G. Larson, J. Phys. Chem. B 110 (2006) p.18204.10.1021/jp0630830
  • H. Lee and R.G. Larson, J. Phys. Chem. B 112 (2008) p.7778.10.1021/jp802606y
  • H. Lee and R.G. Larson, Molecules 14 (2009) p.423.10.3390/molecules14010423
  • H. Lee and R.G. Larson, J. Phys. Chem. C 115 (2011) p.5316.10.1021/jp1100285
  • H. Lee and R.G. Larson, J. Phys. Chem. B 112 (2008) p.12279.10.1021/jp805026m
  • H. Lee and R.G. Larson, Macromolecules 44 (2011) p.2291.10.1021/ma102482u
  • M.A. Yessine and J.C. Leroux, Adv. Drug Delivery Rev. 56 (2004) p.999.10.1016/j.addr.2003.10.039
  • A.T. Ngo, P. Karam and G. Cosa, Pure Appl. Chem. 83 (2011) p.43.
  • G.L. Kenausis, J. Vörös, D.L. Elbert, N.P. Huang, R. Hofer, L. Ruiz-Taylor, M. Textor, J.A. Hubbell and N.D. Spencer, J. Phys. Chem. B 104 (2000) p.3298.10.1021/jp993359m
  • J. Luten, C.F. van Nostrum, S.C. De Smedt and W.E. Hennink, J. Control. Release 126 (2008) p.97.10.1016/j.jconrel.2007.10.028
  • L. Ding, E.Y. Chi, K.S. Schanze, G.P. Lopez and D.G. Whitten, Langmuir 26 (2010) p.5544.10.1021/la9038045
  • L. Parhamifar, A.K. Larsen, A.C. Hunter, T.L. Andresen and S.M. Moghimi, Soft Matter 6 (2010) p.4001.10.1039/c000190b
  • I.M. Helander, H.L. Alakomi, K. Latva-Kala and P. Koski, Microbiology 143 (1997) p.3193.10.1099/00221287-143-10-3193
  • C.K. Choudhury, A. Kumar and S. Roy, Biomacromolecules 14 (2013) p.3759.10.1021/bm4011408
  • E.H. Hill, K. Stratton, D.G. Whitten and D.G. Evans, Langmuir 28 (2012) p.14849.10.1021/la303158c
  • M. Kepczynski, D. Jamróz, M. Wytrwal, J. Bednar, E. Rzad and M. Nowakowska, Langmuir 28 (2012) p.676.10.1021/la203748q
  • M.L. Immordino, F. Dosio and L. Cattel, Int. J. Nanomed. 1 (2006) p.297.
  • S.M. Moghimi and J. Szebeni, Prog. Lipid Res. 42 (2003) p.463.10.1016/S0163-7827(03)00033-X
  • A. Sharma and U.S. Sharma, Int. J. Pharm. 154 (1997) p.123.10.1016/S0378-5173(97)00135-X
  • G. Srinivas, J.C. Shelley, S.O. Nielsen, D.E. Discher and M.L. Klein, J. Phys. Chem. B 108 (2004) p.8153.10.1021/jp037842f
  • G. Rossi, P.F.J. Fuchs, J. Barnoud and L. Monticelli, J. Phys. Chem. B 116 (2012) p.14353.10.1021/jp3095165
  • G. Srinivas and M.L. Klein, Mol. Phys. 102 (2004) p.883.10.1080/00268970410001704380
  • H. Lee, A.H. de Vries, S.J. Marrink and R.W. Pastor, J. Phys. Chem. B 113 (2009) p.13186.10.1021/jp9058966
  • S.M. Moghimi, A.C. Hunter and J.C. Murray, Pharmacol. Rev. 53 (2001) p.283.
  • P. Alexandridis, J.F. Holzwarth and T.A. Hatton, Macromolecules 27 (1994) p.2414.10.1021/ma00087a009
  • M. Redhead, G. Mantovani, S. Nawaz, P. Carbone, D.C. Gorecki, C. Alexander and C. Bosquillon, Pharm. Res. 29 (2012) p.1908.10.1007/s11095-012-0716-6
  • S. Nawaz, M. Redhead, G. Mantovani, C. Alexander, C. Bosquillon and P. Carbone, Soft Matter 8 (2012) p.6744.10.1039/c2sm25327e
  • S. Hezaveh, S. Samanta, A. De Nicola, G. Milano and D. Roccatano, J. Phys. Chem. B 116 (2012) p.14333.10.1021/jp306565e
  • B. Lee and M.A. Firestone, Biomacromolecules 9 (2008) p.1541.10.1021/bm701348r
  • A. De Nicola, S. Hezaveh, Y. Zhao, T. Kawakatsu, D. Roccatano and G. Milano, Phys. Chem. Chem. Phys. 16 (2014) p.5093.10.1039/c3cp54242d
  • C.M. Rochman, M.A. Browne, B.S. Halpern, B.T. Hentschel, E. Hoh, H.K. Karapanagioti, L.M. Rios-Mendoza, H. Takada, S. Teh and R.C. Thompson, Nature 494 (2013) p.169.10.1038/494169a
  • V. Hidalgo-Ruz, L. Gutow, R.C. Thompson and M. Thiel, Environ. Sci. Technol. 46 (2012) p.3060.10.1021/es2031505
  • E.J. Carpenter, S.J. Anderson, G.R. Harvey, H.P. Miklas and B.B. Peck, Science 178 (1972) p.749.10.1126/science.178.4062.749
  • M.A. Browne, A. Dissanayake, T.S. Galloway, D.M. Lowe and R.C. Thompson, Environ. Sci. Technol. 42 (2008) p.5026.10.1021/es800249a
  • C.M. Boerger, G.L. Lattin, S.L. Moore and C.J. Moore, Mar. Pollut. Bull. 60 (2010) p.2275.10.1016/j.marpolbul.2010.08.007
  • Y. Zhang, S. Tekobo, Y. Tu, Q. Zhou, X. Jin, S.A. Dergunov, E. Pinkhassik and B. Yan, ACS Appl. Mater. Interfaces 4 (2012) p.4099.10.1021/am300840p
  • P.J. Smith, M. Giroud, H.L. Wiggins, F. Gower, J.A. Thorley, B. Stolpe, J. Mazzolini, R.J. Dyson and J.Z. Rappoport, Int. J. Nanomed. 7 (2012) p.2045.
  • N.R. Yacobi, N. Malmstadt, F. Fazlollahi, L. DeMaio, R. Marchelletta, S.F. Hamm-Alvarez, Z. Borok, K.-J. Kim and E.D. Crandall, Am. J. Respir. Cell Mol. Biol. 42 (2010) p.604.10.1165/rcmb.2009-0138OC
  • T.H.F. Thake, J.R. Webb, A. Nash, J.Z. Rappoport and R. Notman, Soft Matter 9 (2013) p.10265.10.1039/c3sm51225h
  • G. Rossi, J. Barnoud and L. Monticelli, J. Phys. Chem. Lett. 5 (2014) p.241.10.1021/jz402234c
  • G. Rossi, L. Monticelli, S.R. Puisto, I. Vattulainen and T. Ala-Nissila, Soft Matter 7 (2011) p.698.10.1039/C0SM00481B
  • T. Konishi, T. Yoshizaki, T. Saito, Y. Einaga and H. Yamakawa, Macromolecules 23 (1990) p.290.10.1021/ma00203a050
  • D. Lingwood and K. Simons, Science 327 (2010) p.46.10.1126/science.1174621
  • K. Simons and E. Ikonen, Nature 387 (1997) p.569.10.1038/42408
  • J. Barnoud, G. Rossi, S.J. Marrink and L. Monticelli, PLoS Comput. Biol. 10 (2014) p.e1003873.10.1371/journal.pcbi.1003873
  • H.I. Ingólfsson, M.N. Melo, F.J. van Eerden, C. Arnarez, C.A. Lopez, T.A. Wassenaar, X. Periole, A.H. de Vries, D.P. Tieleman and S.J. Marrink, J. Am. Chem. Soc. 136 (2014) p.14554.10.1021/ja507832e
  • T.A. Wassenaar, H.I. Ingólfsson, R.A. Böckmann, D.P. Tieleman and S.J. Marrink, J. Chem. Theory Comput. 11 (2015) p.2144.10.1021/acs.jctc.5b00209
  • D. Shorthouse, G. Hedger, H. Koldsø and M.S.P. Sansom, Biochimie 120 (2016) p.105.10.1016/j.biochi.2015.09.033
  • H. Koldso, D. Shorthouse, J. Helie and M.S.P. Sansom, PLoS Comput. Biol. 10 (2014) p.e1003911.
  • S. Sharma, B.N. Kim, P.J. Stansfeld, M.S.P. Sansom and M. Lindau, PLoS ONE 10 (2015) p.e0144814.
  • G. Rossi, J. Barnoud and L. Monticelli, Phys. Scr. 87 (2013) p.058503.
  • B.J. Reynwar, G. Illya, V.A. Harmandaris, M.M. Müller, K. Kremer and M. Deserno, Nature 447 (2007) p.461.10.1038/nature05840
  • J. Wong-Ekkabut, S. Baoukina, W. Triampo, I.M. Tang, D.P. Tieleman and L. Monticelli, Nat. Nanotechnol. 3 (2008) p.363.10.1038/nnano.2008.130
  • A. Šarić and A. Cacciuto, Phys. Rev. Lett. 108 (2012) p.118101.
  • H. Zhang, Q. Ji, C. Huang, S. Zhang, B. Yuan, K. Yang and Y.-Q. Ma, Sci. Rep. 5 (2015) p.10525.10.1038/srep10525
  • J. Barnoud, G. Rossi and L. Monticelli, Phys. Rev. Lett. 112 (2014) p.068102.10.1103/PhysRevLett.112.068102
  • R. Lipowsky and H.G. Döbereiner, Europhys. Lett. 43 (1998) p.219.10.1209/epl/i1998-00343-4
  • M. Deserno and W.M. Gelbart, J. Phys. Chem. B 106 (2002) p.5543.10.1021/jp0138476
  • H.J. Gao, W.D. Shi and L.B. Freund, Proc. Nat. Acad. Sci. USA 102 (2005) p.9469.10.1073/pnas.0503879102
  • S. Dasgupta, T. Auth, N.S. Gov, T.J. Satchwell, E. Hanssen, E.S. Zuccala, D.T. Riglar, A.M. Toye, T. Betz, J. Baum and G. Gompper, Biophys. J. 107 (2014) p.43.10.1016/j.bpj.2014.05.024
  • S. Dasgupta, T. Auth and G. Gompper, Nano Lett. 14 (2014) p.687.10.1021/nl403949h
  • R. Vacha, F.J. Martinez-Veracoechea and D. Frenkel, ACS Nano 6 (2012) p.10598.
  • R. Vácha, F.J. Martinez-Veracoechea and D. Frenkel, Nano Lett. 11 (2011) p.5391.10.1021/nl2030213
  • G. Bussi, A. Laio and M. Parrinello, Phys. Rev. Lett. 96 (2006) p.090601.
  • M. Bonomi, D. Branduardi, G. Bussi, C. Camilloni, D. Provasi, P. Raiteri, D. Donadio, F. Marinelli, F. Pietrucci, R.A. Broglia and M. Parrinello, Comput. Phys. Commun. 180 (2009) p.1961.10.1016/j.cpc.2009.05.011
  • Y. Okamoto, J. Mol. Graphics Modell. 22 (2004) p.425.10.1016/j.jmgm.2003.12.009
  • D. Bochicchio, E. Panizon, R. Ferrando, L. Monticelli and G. Rossi, J. Chem. Phys. 143 (2015) p.144108.10.1063/1.4932159