2,348
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcements

Ion Torrent next-generation sequencing reveals the complete mitochondrial genome of koi carp (Cyprinus carpio, Cyprinidae)

, , , , &
Pages 34-36 | Received 02 Dec 2015, Accepted 22 Dec 2015, Published online: 05 Feb 2016

References

  • FAO. 2012. Statistics and Information Service of the Fisheries and Aquaculture Department: Fishery and Aquaculture Statistics 2010.
  • Howe JR, Klimstra DS, Cordon-Cardo C. 1997. DNA extraction from paraffin-embedded tissues using a salting-out procedure: a reliable method for PCR amplification of archival material. Histol Histopathol. 12:595–601.
  • Hu GF, Liu XJ, Li Z, Liang HW, Hu SN, Zou GW. 2014a. Complete mitochondrial genome of Xingguo red carp (Cyprinus carpio var. singuonensis) and purse red carp (Cyprinus carpio var. wuyuanensis). Mitochondrial DNA.
  • Hu GF, Liu XJ, Zou GW, Li Z, Liang HW, Hu SN. 2014b. Complete mitochondrial genome of Yangtze River wild common carp (Cyprinus carpio haematopterus) and Russian scattered scale mirror carp (Cyprinus carpio carpio). Mitochondrial DNA.
  • Lin M, Zou J, Wang C. 2014. Complete mitochondrial genomes of domesticated and wild common carp (Cyprinus carpio L.). Mitochondrial DNA.
  • Mabuchi K, Song H. 2014. The complete mitochondrial genome of the Japanese ornamental koi carp (Cyprinus carpio) and its implication for the history of koi. Mitochondrial DNA 25:35–36.
  • Posada D. 2008. jModelTest: phylogenetic model averaging. Mol Biol Evol. 25:1253–1256.
  • Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y. 2012. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics 13:341.
  • Raman S, Pavan-Kumar A, Koringa PG, Patel N, Shah T, Singh RK, Krishna G, Joshi CG, Gireesh-Babu P, Chaudhari A, et al. 2015. Ion torrent next-generation sequencing reveals the complete mitochondrial genome of endangered mahseer Tor khudree (Sykes, 1839). Mitochondrial DNA.
  • Salipante SJ, Kawashima T, Rosenthal C, Hoogestraat DR, Cummings LA, Sengupta DJ, Harkins TT, Cookson BT, Hoffman NG. 2014. Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling. Appl Environ Microbiol. 80:7583–7591.
  • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690.
  • Wang B, Ji P, Wang J, Sun J, Wang C, Xu P, Sun X. 2013. The complete mitochondrial genome of the Oujiang color carp, Cyprinus carpio var. color (Cypriniformes, Cyprinidae). Mitochondrial DNA 24:19–21.
  • Xie Z, Yu C, Guo L, Li M, Yong Z, Liu X, Meng Z, Lin H. 2014. Ion Torrent next-generation sequencing reveals the complete mitochondrial genome of black and reddish morphs of the Coral Trout Plectropomus leopardus. Mitochondrial DNA.
  • Yang H, Zhao H, Sun J, Chen Y, Liu L, Zhang Y, Liu L. 2014. The complete mitochondrial genome of the Hemibarbus medius (Cypriniformes, Cyprinidae). Mitochondrial DNA.
  • Zhao H, Yang H, Sun J, Chen Y, Liu L, Li G, Liu L. 2014. The complete mitochondrial genome of the Anabas testudineus (Perciformes, Anabantidae). Mitochondrial DNA.