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Mitogenome Announcement

The complete mitochondrial genome of the Thomas’s horseshoe bat (Rhinolophus thomasi) using next-generation sequencing and Sanger sequencing

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Pages 964-965 | Received 16 Nov 2016, Accepted 27 Nov 2016, Published online: 23 Dec 2016

References

  • Berger SA, Krompass D, Stamatakis A. 2011. Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood. Syst Biol. 60:291–302.
  • Castella V, Ruedi M, Excoffier L. 2001. Contrasted patterns of mitochondrial and nuclear structure among nursery colonies of the bat Myotis myotis. J Evol Biol. 14:708–720.
  • Csorba G, Ujhelyi P, Thomas N. 2003. Horseshoe bats of the world (Chiroptera, Rhinolophidae). Shropshire, UK: Alana Books.
  • Dai M, Thompson RC, Maher C, Contreras-Galindo R, Kaplan MH, Markovitz DM, Omenn G, Meng F. 2010. NGSQC: cross-platform quality analysis pipeline for deep sequencing data. BMC Genomics. 11:S7. doi: 10.1186/1471-2164-11-S4-S7.
  • Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, et al. 2013. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc. 8:1494–1512.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
  • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics. 2:1754–1760.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R, 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Mao X, Thong VD, Bates PJ, Jones G, Zhang S, Rossiter SJ. 2013. Multiple cases of asymmetric introgression among horseshoe bats detected by phylogenetic conflicts across loci. Biol J Linn Soc. 110:346–361.