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Mitogenome Announcement

The complete mitochondrial DNA of the Cuban gar (Atractosteus tristoechus)

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Pages 359-360 | Received 11 May 2017, Accepted 03 Jun 2017, Published online: 14 Jun 2017

References

  • Aljanabi SM, Martinez I. 1997. Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques. Nucleic Acids Res. 25:4692–4693.
  • April J, Mayden RL, Hanner R, Bernatchez L. 2011. Genetic calibration of species diversity among North America's Freshwater Fishes. Proc Natl Acad Sci USA. 108:10603–10607.
  • Bernatchez L, Wilson CC. 1998. Comparative phylogeography of nearctic and palearctic freshwater fishes. Mol Ecol. 7:431–452.
  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Putz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69:313–319.
  • Bohn S, Kreiser BR, Daugherty DJ, Bodine KA. 2017. Natural hybridization of lepisosteids: implications for managing the Alligator Gar. N Am J Fish Manage. 37:405–413.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Braasch I, Gehrke AR, Smith JJ, Kawasaki K, Manousaki T, Pasquier J, Amores A, Desvignes T, Batzel P, Catchen J, et al. 2016. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nat Genet. 48:427–437.
  • Broughton RE, Reneau PC. 2006. Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes. Mol Biol Evol. 23:1516–1524.
  • Coil D, Jospin G, Darling AE. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 31:587–589.
  • Del Río-Portilla MA, Vargas-Peralta CE, Lafarga-De La Cruz F, Arias-Rodriguez L, Delgado-Vega R, Galván-Tirado C, García-de-León FJ. 2016. The complete mitochondrial DNA of the tropical gar (Atractosteus tropicus). Mitochondrial DNA A DNA Mapp Seq Anal. 27:557–558.
  • Herrington SJ, Hettiger KN, Heist EJ, Keeney DB. 2008. Hybridization between Longnose and Alligator Gars in captivity, with comments on possible gar hybridization in nature. Trans Am Fish Soc. 137:158–164.
  • Hubbs CL. 1955. Hybridization between fish species in nature. Syst Zool. 4:1–20.
  • Inoue JG, Miya M, Tsukamoto K, Nishida M. 2003. Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of the ‘ancient fish’. Mol Phylogenet Evol. 26:110–120.
  • Iwasaki W, Fukunaga T, Isagozawa R, Yamada K, Maeda Y, Satoh TP, Sado T, Mabuchi K, Takeshima H, Miya M, et al. 2013. MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline. Mol Biol Evol. 30:2531–2540.
  • Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
  • Rabosky DL, Santini F, Eastman J, Smith SA, Sidlauskas B, Chang J, Alfaro ME. 2013. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation. Nat Commun. 4:1958.
  • Rodríguez F, Oliver JL, Marín A, Medina JR. 1990. The general stochastic model of nucleotide substitution. J Theor Biol. 142:485–501.
  • Sipiorski JT. 2011. The world according to gars: the molecular systematics and comparative phylogeography of living gars (Actinopterygii: Lepisosteidae) [Doctoral dissertation]. Carbondale (IL): Southern Illinois University Carbondale.
  • Symonová R, MajtáNová Z, Arias-Rodriguez L, Mořkovský L, Kořínková T, Cavin L, Pokorná MJ, Doležálková M, Flajšhans M, Normandeau E, et al. 2016. Genome compositional organization in gars shows more similarities to mammals than to other ray-finned fish. J Exp Zool B Mol Dev Evol. [accessed 2017 Mar 3];13. http://onlinelibrary.wiley.com/doi/10.1002/jez.b.22719/pdf.
  • Ulmo-Díaz G, Castellanos-Gell J, Ponce de León JL, Casane D, Hurtado A, García-Machado E. 2016. Evidence of very low genetic diversity of Cuban gar (Atractosteus tristoechus). Rev Invest. 36:16–23.
  • Wright JJ, David SR, Near TJ. 2012. Gene trees, species trees, and morphology converge on a similar phylogeny of living gars (Actinopterygii: Holostei: Lepisosteidae), an ancient clade of ray-finned fishes. Mol Phylogenet Evol. 63:848–856.
  • Yu H, Li J, Ruan Z, Ma X, Zhang J, Wang M, Shi Q, You X. 2016. The complete mitochondrial genome of Florida gar (Lepisosteus platyrhincus). Mitochondrial DNA B Res. 1:128–129.