Hermaphroditic freshwater mussel Anodonta cygnea does not have supranumerary open reading frames in the mitogenome

References

• An C, Ouyang S, Zhou C-H, Wu X-P. 2016. The complete F-type mitochondrial genome of Chinese Anodonta arcaeformis (Bivalvia: Unionidae: Anodontinae). Mitochondrial DNA Part A. 27:1552–1553.
   PubMed Web of Science ®Google Scholar
• Bogan AE, Roe KJ. 2008. Freshwater bivalve (Unioniformes) diversity, systematics, and evolution: status and future directions. J N Am Benthol Soc. 27:349–369.
   Web of Science ®Google Scholar
• Bouckaert R, Heled J, Kühnert D, Vaughan T, Wu C-H, Xie D, Suchard MA, Rambaut A, Drummond AJ, Prlic A. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. PLoS Comput Biol. 10:e1003537.
   PubMed Web of Science ®Google Scholar
• Breton S, Beaupré HD, Stewart DT, Piontkivska H, Karmakar M, Bogan AE, Blier PU, Hoeh WR. 2009. Comparative mitochondrial genomics of freshwater mussels (Bivalvia: Unionoida) with doubly uniparental inheritance of mtDNA: gender-specific open reading frames and putative origins of replication. Genetics. 183:1575–1589.
   PubMed Web of Science ®Google Scholar
• Breton S, Stewart DT, Shepardson S, Trdan RJ, Bogan AE, Chapman EG, Ruminas AJ, Piontkivska H, Hoeh WR. 2011. Novel protein genes in animal mtDNA: a new sex determination system in freshwater mussels (Bivalvia: Unionoida)? Mol Biol Evol. 28:1645–1659.
   PubMed Web of Science ®Google Scholar
• Burzyński A, Soroka M, Mioduchowska M, Kaczmarczyk A, Sell J. 2017. The complete maternal and paternal mitochondrial genomes of Unio crassus: mitochondrial molecular clock and the overconfidence of molecular dating. Mol Phylogenet Evol. 107:605–608.
   PubMed Web of Science ®Google Scholar
• Doucet-Beaupré H, Breton S, Chapman EG, Blier PU, Bogan AE, Stewart DT, Hoeh WR. 2010. Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA. BMC Evol Biol. 10:50.
   PubMed Web of Science ®Google Scholar
• Fonseca MM, Lopes-Lima M, Eackles MS, King TL, Froufe E. 2016. The female and male mitochondrial genomes of Unio delphinus and the phylogeny of freshwater mussels (Bivalvia: Unionida). Mitochondrial DNA Part B. 1:954–957.
   Web of Science ®Google Scholar
• He F, Wang G. l, Li J. 2016. Complete F-type mitochondrial genome of Chinese freshwater mussels Lamprotula gottschei. Mitochondrial DNA Part A. 27:246–247.
   PubMed Web of Science ®Google Scholar
• Hoeh WR, Stewart DT, Guttman SI. 2002. High fidelity of mitochondrial genome transmission under the doubly uniparental mode of inheritance in freshwater mussels (Bivalvia: Unionoidea). Evol Int J Org Evol. 56:2252–2261.
   PubMed Web of Science ®Google Scholar
• Kumar S, Stecher G, Tamura K. 2016. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 33:1870–1874.
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics. 23:2947.
   PubMed Web of Science ®Google Scholar
• Lee JH, Choi EH, Kim SK, Ryu SH, Hwang UW. 2012. Mitochondrial genome of the cockscomb pearl mussel Cristaria plicata (Bivalvia, Unionoida, Unionidae). Mitochondrial DNA. 23:39–41.
   PubMed Web of Science ®Google Scholar
• Lopes-Lima M, Fonseca MM, Aldridge DC, Bogan AE, Gan HM, Ghamizi M, Sousa R, Teixeira A, Varandas S, Zanatta D, et al. 2017. The first Margaritiferidae male (M-type) mitogenome: mitochondrial gene order as a potential character for determining higher-order phylogeny within Unionida (Bivalvia). J Molluscan Stud. 83:249–252.
   Web of Science ®Google Scholar
• Mitchell A, Guerra D, Stewart D, Breton S. 2016. In silico analyses of mitochondrial ORFans in freshwater mussels (Bivalvia: Unionoida) provide a framework for future studies of their origin and function. BMC Genomics. 17:579.
   PubMed Web of Science ®Google Scholar
• Piechocki A, Dyduch-Falniowska A. 1993. Mięczaki (Mollusca). Małże (Bivalvia). [Molluscs (Molusca). Bivalves (Bivalvia) Fauna Słodkowodna Polski. Warszawa (Poland): PWN. Polish.
   Google Scholar
• Rambaut A. 2009. FigTree, a graphical viewer of phylogenetic trees [Internet]. Institute of Evolutionary Biology, University of Edinburgh. Available from: http://tree.bio.ed.ac.uk/software/figtree
   Google Scholar
• Skibinski DOF, Gallagher C, Beynon CM. 1994. Mitochondrial DNA inheritance. Nature. 368:817–818.
   PubMed Web of Science ®Google Scholar
• Song X-L, Ouyang S, Zhou C-H, Wu X-P. 2016. Complete maternal mitochondrial genome of freshwater mussel Anodonta lucida (Bivalvia: Unionidae: Anodontinae). Mitochondrial DNA Part A. 27:549–550.
   PubMed Web of Science ®Google Scholar
• Soroka M. 2010. Characteristics of mitochondrial DNA of unionid bivalves (Mollusca: Bivalvia: Unionidae). I. Detection and characteristics of doubly uniparental inheritance (DUI) of unionid mitochondrial DNA. Folia Malacol. 18:147–188.
   Google Scholar
• Soroka M, Burzyński A. 2010. Complete sequences of maternally inherited mitochondrial genomes in mussels Unio pictorum (Bivalvia, Unionidae). J Appl Genet. 51:469–476.
   PubMed Web of Science ®Google Scholar
• Soroka M, Burzyński A. 2015. Complete female mitochondrial genome of Anodonta anatina (Mollusca: Unionidae): confirmation of a novel protein-coding gene (F ORF). Mitochondrial DNA. 26:267–269.
   PubMed Web of Science ®Google Scholar
• Soroka M, Burzyński A. 2017. Doubly uniparental inheritance and highly divergent mitochondrial genomes of the freshwater mussel Unio tumidus (Bivalvia: Unionidae). Hydrobiologia, In press. Available from: https://link.springer.com/article/10.1007/s10750-017-3113-7
   PubMed Web of Science ®Google Scholar
• Staden R, Judge DP, Bonfield JK. 2001. Sequence assembly and finishing methods. In: Baxevanis AD, Ouellette BFF, editors. Bioinformatics: a practical guide to the analysis of genes and proteins, Vol. 43, 2nd ed. New York (UK): Wiley.
   Google Scholar
• Wang G, Cao X, Li J. 2013. Complete F-type mitochondrial genome of Chinese freshwater mussel Lamprotula tortuosa. Mitochondrial DNA. 24:513–515.
   PubMed Web of Science ®Google Scholar
• Wang G, Guo L, Li J. 2016a. The F-type complete mitochondrial genome of Arconaia lanceolata. Mitochondrial DNA Part A. 27:322–323.
   PubMed Web of Science ®Google Scholar
• Wang G, Xue T, Chen M, Guo L, Li J. 2016b. Complete F-type mitochondrial genome of freshwater mussels Unio douglasiae. Mitochondrial DNA Part A. 27:4021–4022.
   PubMed Web of Science ®Google Scholar
• Wu R-W, An C-T, Wu X-P, Zhou C-H, Ouyang S. 2016. Complete maternal mitochondrial genome of freshwater mussel Aculamprotula tientsinensis (Bivalvia: Unionidae: Unioninae). Mitochondrial DNA Part A. 27:4520–4521.
   PubMed Web of Science ®Google Scholar
• Zbawicka M, Burzyński A, Wenne R. 2007. Complete sequences of mitochondrial genomes from the Baltic mussel Mytilus trossulus. Gene. 406:191–198.
   PubMed Web of Science ®Google Scholar
• Zhou C-H, Ouyang S, Wu X-P, Ding M-H. 2016. The complete maternal mitochondrial genome of rare Chinese freshwater mussel Lepidodesma languilati (Bivalvia: Unionidae: Unioninae). Mitochondrial DNA Part A. 27:4615–4616.
   PubMed Web of Science ®Google Scholar
• Zouros E, Ball AO, Saavedra C, Freeman KR. 1994. Mitochondrial DNA inheritance. Nature. 368:818.
   PubMed Web of Science ®Google Scholar