933
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum

, , , &
Pages 431-433 | Received 05 Feb 2018, Accepted 06 Mar 2018, Published online: 01 Apr 2018

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19:455–477.
  • Bi Y, Du YP, Chen XQ, Yang FP, Xue J, Zhang XH, Dong R. 2016. The complete chloroplast genome sequence of Lilium fargesii (Lilium, Liliaceae). Conserv Genet Resour. 8:419–422.
  • Du Y, Bi Y, Chen X, Yang F, Xue J, Zhang X. 2016. The complete chloroplast genome of Lilium cernuum: genome structure and evolution. Conserv Genet Resour. 8:375–378.
  • Du YP, Bi Y, Yang FP, Zhang MF, Chen XQ, Xue J, Zhang XH. 2017. Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses. Sci Rep. 7:5751.
  • Ji HS, Chang YY, Do HDK, Lee WB, Kim JH. 2016. The complete chloroplast genome sequence of Lilium tsingtauense Gilg (sect. Martagon, Liliaceae). Mitochondrial DNA B Resour. 1:318–320.
  • Kim JS, Kim JH. 2013. Comparative genome analysis and phylogenetic relationship of order Liliales insight from the complete plastid genome sequences of two Lilies (Lilium longiflorum and Alstroemeria aurea). PLoS One. 8:e68180.
  • Kim K, Hwang YJ, Lee SC, Yang TJ, Lim KB. 2015. The complete chloroplast genome sequence of Lilium hansonii Leichtlin ex D.D.T.Moore. Mitochondrial DNA. 27:3678–3679.
  • Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R. 2001. REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res. 29:4633–4642.
  • Liang SY, Tamura MN. 2000. Lilium Linnaeus, vol. 24. Beijing (China)/St. Louis (MO): Science Press/Missouri Botanical Garden Press/Flora of China.
  • Lohse M, Drechsel O, Kahlau S, Bock R. 2013. OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res. 41:W575–W581.
  • Lu RS, Li P, Qiu YX. 2016. The complete chloroplast genomes of three Cardiocrinum (Liliaceae) species: comparative genomic and phylogenetic analyses. Front Plant Sci. 7:2054.
  • Mennes CB, Lam VKY, Rudall PJ, Lyon SP, Graham SW, Smets EF, Merckx VSFT. 2015. Ancient Gondwana break-up explains the distribution of the mycoheterotrophic family Corsiaceae (Liliales). J Biogeogr. 42:1123–1136.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Paper presented at: the Gateway Computing Environments Workshop (GCE); Nov 14.
  • Patel RK, Jain M. 2012. NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7:e30619.
  • Wyman SK, Jansen RK, Boore JL. 2004. Automatic annotation of organellar genomes with DOGMA. Bioinformatics. 20:3252–3255.
  • Zhang Q, Bi Y, Zhang MF, Chen XQ, Yang FP, Xue J, Du YP, Zhang XH. 2017. The complete chloroplast genome of Lilium taliense, an endangered species endemic to China. Conserv Genet Resour. 9:201–203.