1,075
Views
7
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome sequence of the food fermentation fungus, Aspergillus luchuensis

ORCID Icon, ORCID Icon, , , , & show all
Pages 945-946 | Received 27 Oct 2018, Accepted 02 Nov 2018, Published online: 20 Feb 2019

References

  • Futagami T, Mori K, Yamashita A, Wada S, Kajiwara Y, Takashita H, Omori T, Takegawa K, Tashiro K, Kuhara S, et al. 2011. Genome sequence of the white koji mold Aspergillus kawachii IFO 4308, used for brewing the Japanese distilled spirit shochu. Eukaryotic Cell. 10:1586–1587.
  • Hong S-B, Lee M, Kim D-H, Varga J, Frisvad JC, Perrone G, Gomi K, Yamada O, Machida M, Houbraken J, et al. 2013. Aspergillus luchuensis, an industrially important black Aspergillus in East Asia. PLoS One. 8:e63769.
  • Hong S-B, Yamada O, Samson RA. 2014. Taxonomic re-evaluation of black koji molds. Appl Microbiol Biotechnol. 98:555–561.
  • Houbraken J, Samson R. 2011. Phylogeny of Penicillium and the segregation of Trichocomaceae into three families. Stud Mycol. 70:1–51.
  • Inui T. 1901a. Ryukyu awamori hakko kin chyosa houkokusyo. J Chem Soc Japan. 4:1421–1430.
  • Inui T. 1901b. Untersuchungen uber die niederen Organismen welche sich bei der Zubereitung des alkoholischen Getrankes "Awamori" betheiligen. J Coll Sci. 15:465–476.
  • Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, et al. 2012. Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability. BMC Genomics. 13:698.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kocsubé S, Perrone G, Magistà D, Houbraken J, Varga J, Szigeti G, Hubka V, Hong S-B, Frisvad JC, Samson R. 2016. Aspergillus is monophyletic: evidence from multiple gene phylogenies and extrolites profiles. Stud Mycol. 85:199–213.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv Preprint arXiv. 13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Samson R, Peterson S, Frisvad JC, Varga J. 2011. New species in Aspergillus section Terrei. Stud Mycol. 69:39–55.
  • Xu Z, Wu L, Liu S, Chen Y, Zhao Y, Yang G. 2018. Structure characteristics of Aspergillus egyptiacus mitochondrial genome, an important fungus during the fermentation of dark tea. Mitochondrial DNA B. 3:1135–1136.
  • Yu T-S, Yeo S-H, Kim H-S. 2004. A new species of hyphomycetes, Aspergillus coreanus sp. nov., isolated from traditional Korean nuruk. J Microbiol Biotechnol. 14:182–187.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhao QY, Wang Y, Kong YM, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics.12:S2.