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Mitogenome Announcement

Characterization of the complete plastid genome of Fragilariopsis cylindrus

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Pages 1138-1139 | Received 30 Dec 2018, Accepted 15 Jan 2019, Published online: 18 Mar 2019

References

  • Anton B, Sergey N, Dmitry A, Gurevich AA, Mikhail D, Kulikov AS, Lesin VM, Nikolenko SI, Son P, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19:455–477.
  • Bi G, Mao Y, Xing Q, Cao M. 2018. HomBlocks: a multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching. Genomics. 110:18–22.
  • Christoph H, Bachmann L, Chevreux B. 2013. Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach. Nucleic Acids Res. 41:e129–e129.
  • Graham RJ, Bellare P, DeRisi JL. 2013. PRICE: software for the targeted assembly of components of (Meta) genomic sequence data. G3 Genes Genomes Genet. 3:865–880.
  • Huang DI, Cronk QCB. 2015. Plann: a command-line application for annotating plastome sequences. Appl Plant Sci. 3:1500026.
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955–964.
  • Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, et al. 2017. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 541:536.
  • Wick Ryan R, Schultz Mark B, Justin S, Holt KE. 2015. Bandage: interactive visualization of de novo genome assemblies. Bioinformatics. 31:3350–3352.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30:2725–2729.