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Mitogenome Announcement

Characterization of the complete chloroplast genome of black poplar (Populus nigra L.)

, ORCID Icon & ORCID Icon
Pages 1261-1262 | Received 28 Jan 2019, Accepted 02 Mar 2019, Published online: 23 Mar 2019

References

  • Doyle JJ. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. 19:11–15.
  • Huang DI, Cronk QC. 2015. Plann: a command-line application for annotating plastome sequences. Appl Plant Sci. 3:1–3.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
  • Lohse M, Drechsel O, Kahlau S, Bock R. 2013. OrganellarGenomeDRAW-a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res. 41:W575–W581.
  • Smulders MJM, Cottrell JE, Lefèvre F, Schoot JVD, Arens P, Vosman B, Tabbener HE, Grassi F, Fossati T, Castiglione S. 2008. Structure of the genetic diversity in black poplar (Populus nigra L.) populations across European river systems: consequences for conservation and restoration. For Ecol Manage. 255:0–1399.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, et al. 2006. The genome of black cottonwood, Populus trichocarpa (Torr. &; Gray). Science. 313:1596–1604.
  • van der Schoot J, Pospíšková M, Vosman B, Smulders MJM. 2000. Development and characterization of microsatellite markers in black poplar (Populus nigra L.). Theor Appl Genet. 101:317–322.
  • Yang W, Wang W, Zhang L, Chen Z, Guo X, Ma T. 2016. Characterization of the complete chloroplast genome of Idesia polycarpa. Conserv Genet Resour. 8:271–273.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.