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Mitogenome Announcement

The complete chloroplast genome of tulip tree, Liriodendron tulifipera L. (Magnoliaceae): investigation of intra-species chloroplast variations

ORCID Icon, ORCID Icon, ORCID Icon, &
Pages 2523-2524 | Received 28 Feb 2019, Accepted 13 Mar 2019, Published online: 16 Jul 2019

References

  • Cai Z, Penaflor C, Kuehl JV, Leebens-Mack J, Carlson JE, dePamphilis CW, Boore JL, Jansen RK. 2006. Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids. BMC Evol Biol. 6:77.
  • Chase M, Christenhusz M, Fay M, Byng J, Judd W, Soltis D, Mabberley D, Sennikov A, Soltis P, Stevens P. 2016. An update of the angiosperm phylogeny group classification for the orders and families of flowering plants: APG IV. Bot J Linnean Soc. 181:1–20.
  • Huang H, Shi C, Liu Y, Mao S-Y, Gao L-Z. 2014. Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships. BMC Evol Biol. 14:151.
  • Ishizuka W, Tabata A, Ono K, Fukuda Y, Hara T. 2017. Draft chloroplast genome of Larix gmelinii var. japonica: insight into intraspecific divergence. J Forest Res. 22:393–398.
  • Jeon J-H, Park H-S, Park JY, Kang TS, Kwon K, Kim YB, Han J-W, Kim SH, Sung SH, Yang T-J. 2019. Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae). Mitochondrial DNA B. 4:176–177.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kim Y, Heo K-I, Park J. under review. The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution. doi:10.1080/23802359.2019.1591179
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Kwon W, Kim Y, Park J. under review. The complete mitochondrial genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: inverted repeats on mitochondrial genome between Korean and Japanese isolates. doi:10.1080/23802359.2019.1565975
  • Li B, Li Y, Cai Q, Lin F, Meng Q, Zheng Y. 2016. The complete chloroplast genome of a Tertiary relict species Liriodendron chinense (Magnoliaceae). Conserv Genet Resour. 8:279–281.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv Preprint arXiv. 13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Park J, Kim Y, Kwon M. under review. The complete mitochondrial genome of tulip tree, Liriodendron tulifipera L. (Magnoliaceae): intra-species variations on mitochondrial genome.doi:10.1080/23802359.2019.1591242
  • Park J, Kim Y, Xi H, Nho M, Woo J, Seo Y. under review. The complete chloroplast genome of high production individual tree of Coffea arabica L. (Rubiaceae).doi:10.1080/23802359.2019.1600386
  • Park J, Xi H, Kim Y, Heo K-I, Nho M, Woo J, Seo Y, Yang JH. under review. The complete chloroplast genome of cold hardiness individual of Coffea arabica L. (Rubiaceae).doi:10.1080/23802359.2019.1586472
  • Park J, Kim Y, Kwon W, Nam S, Song MJ. under review. The second complete chloroplast genome sequence of Nymphaea alba L. (Nymphaeaceae) to investigate inner-species variations.doi:10.1080/23802359.2019.1565968
  • Park J, Kim Y, Lee K. under review. The complete chloroplast genome of Korean mock strawberry, Duchesnea chrysantha (Zoll. & Moritzi) Miq. (Rosoideae).doi:10.1080/23802359.2019.1573114
  • Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. under review. The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea.doi:10.1080/23802359.2019.1580164
  • Park J, Kim Y, Xi H. under review. The complete chloroplast genome of aniseed tree, Illicium anisatum L. (Schisandraceae).doi:10.1080/23802359.2019.1584062
  • Richardson AO, Rice DW, Young GJ, Alverson AJ, Palmer JD. 2013. The “fossilized” mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate. BMC Biol. 11:29.
  • Selvaraj D, Sarma RK, Sathishkumar R. 2008. Phylogenetic analysis of chloroplast matK gene from Zingiberaceae for plant DNA barcoding. Bioinformation. 3:24.
  • Whittall JB, Syring J, Parks M, Buenrostro J, Dick C, Liston A, Cronn R. 2010. Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines. Mol Ecol. 19:100–114.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.