639
Views
3
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete mitochondrial genome of Salix paraflabellaris, an endemic alpine plant of Yunnan province of China

, , , , &
Pages 1394-1395 | Received 28 Feb 2019, Accepted 13 Mar 2019, Published online: 04 Apr 2019

References

  • Chen ZW, Zhao N, Li SS, Grover CE, Nie HS, Wendel JF, Hua JP. 2017. Plant mitochondrial genome evolution and cytoplasmic male sterility. Crit Rev Plant Sci. 36:55–69.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792–1797.
  • Fang Z, Zhao S, Skvortsov AK. 1999. Salicaceae. Flora of China. 4:139–274.
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59:307–321.
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 35:518–522.
  • Huang Y, Wang J, Yang YP, Fan CZ, Chen JH. 2017. Phylogenomic analysis and dynamic evolution of chloroplast genomes in Salicaceae. Frontiers in Plant Science. 8:1050. doi:10.3389/fpls.2017.01050
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14:587.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28:1647–1649.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32:268–274.
  • Porebski S, Bailey LG, Baum BR. 1997. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep. 15:8–15.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45:W6–W11.