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Mitochondrial DNA Part B
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Volume 4, 2019 - Issue 1
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Mitogenome Announcement

The complete chloroplast genome of a critically endangered agarwood tree, Aquilaria crassna (Thymelaeaceae)

Guo-Dong LiFaculty of Traditional Chinese Pharmacy, Yunnan University of Chinese Medicine, Kunming, China; Correspondence[email protected]
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,
Pei-Yu RaoSchool of Life Sciences, Yunnan Normal University, Kunming, ChinaView further author information
,
Jian-Ling GuoSchool of Life Sciences, Yunnan Normal University, Kunming, ChinaView further author information
&
Yong-Hong ZhangSchool of Life Sciences, Yunnan Normal University, Kunming, ChinaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0001-6583-3255View further author information
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Pages 1810-1811 | Received 14 Apr 2019, Accepted 20 Apr 2019, Published online: 11 May 2019

References

  • Barden A, Anak NA, Muliken T, Song M. 2000. Heart of the matter: agarwood use and trade and CITES Implementation for Aquilaria malaccensis. Cambridge, UK: TRAFFIC International.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18.
  • Harvey-Brown Y. 2018. Aquilaria crassna. The IUCN Red List of Threatened Species 2018: e.T32814A2824513.
  • Hashim YY, Kerr PG, Abbas P, Salleh HM. 2016. Aquilaria spp. (agarwood) as source of health beneficial compounds: A review of traditional use, phytochemistry and pharmacology. J Ethnopharmacol. 189:331–360.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Mudunuri SB, Nagarajaram HA. 2007. IMEx: imperfect microsatellite extractor. Bioinformatics. 23:1181–1187.
  • Ng LT, Chang YS, Kadir AA. 1997. A review on agar (gaharu) producing Aquilaria species. J Trop Prod. 2:272–285.
  • Patel RK, Jain M. 2012. NGS QC toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7:e30619.
  • Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst Biol. 57:758–771.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45:W6–W11.
  • Zhang YH, Huang Y, Li ZM, Zhang SD. 2019. Characterization of the complete chloroplast genome of the vulnerable agarwood tree, Aquilaria yunnanensis (Thymelaeaceae). Conserve Genet Resour. 11:161–164.

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