Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 4, 2019 - Issue 2
Submit an article Journal homepage
1,033
Views
2
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete mitochondrial genome of Neocaridina heteropoda koreana Kubo, 1938 (Decapoda: Atyidae)

Jonghyun ParkInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaView further author information
,
Yongsung KimInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaORCID Iconhttp://orcid.org/0000-0002-5349-9226View further author information
ORCID Icon,
Woochan KwonInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaORCID Iconhttp://orcid.org/0000-0001-8665-8097View further author information
ORCID Icon,
Hong XiInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaView further author information
&
Jongsun ParkInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-0786-4701View further author information
ORCID Icon
Pages 2332-2334 | Received 15 May 2019, Accepted 31 May 2019, Published online: 12 Jul 2019

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Crowl TA, McDowell WH, Covich AP, Johnson SL. 2001. Freshwater shrimp effects on detrital processing and nutrients in a tropical headwater stream. Ecology. 82:775–783.
  • Jurado-Rivera JA, Pons J, Alvarez F, Botello A, Humphreys WF, Page TJ, Iliffe TM, Willassen E, Meland K, Juan C, Jaume D. 2017. Phylogenetic evidence that both ancient vicariance and dispersal have contributed to the biogeographic patterns of anchialine cave shrimps. Scientific Rep. 7:2852
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Laslett D, Canbäck B. 2008. ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics. 24:172–175.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv Preprint arXiv. 13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Liang X. 2004. Fauna Sinica. Invertebrata: Crustacea: Decapoda: Atyidae. Beijing (China): Science Press (in Chinese).
  • Mugo-Bundi J, Oyoo-Okoth E, Ngugi CC, Manguya-Lusega D, Rasowo J, Chepkirui‐Boit V, Opiyo M, Njiru J. 2015. Utilization of Caridina nilotica (Roux) meal as a protein ingredient in feeds for Nile tilapia (Oreochromis niloticus). Aquac Res. 46:346–357.
  • Shih H-T, Cai Y, Niwa N, Nakahara Y. 2017. A new species of land-locked freshwater shrimp of the genus Neocaridina (Decapoda: Caridea: Atyidae) from Iki Island, Kyushu, Japan. Zool Stud. 56:1–14.
  • Snyder MN, Small GE, Pringle CM. 2015. Diet‐switching by omnivorous freshwater shrimp diminishes differences in nutrient recycling rates and body stoichiometry across a food quality gradient. Freshwater Biol. 60:526–536.
  • von Rintelen K, Page TJ, Cai Y, Roe K, Stelbrink B, Kuhajda BR, Iliffe TM, Hughes J, von Rintelen T. 2012. Drawn to the dark side: a molecular phylogeny of freshwater shrimps (Crustacea: Decapoda: Caridea: Atyidae) reveals frequent cave invasions and challenges current taxonomic hypotheses. Mol Phylogenet Evol. 63:82–96.
  • Xu G, Du F, Nie Z, Xu P, Gu R. 2016. Complete mitochondrial genome of Caridina nilotica gracilipes. Mitochondrial DNA Part A. 27:1249–1250.
  • Yu Y-Q, Yang W-J, Yang J-S. 2014. The complete mitogenome of the Chinese swamp shrimp Neocaridina denticulata sinensis Kemp 1918 (Crustacea: Decapoda: Atyidae). Mitochondrial DNA. 25:204–205.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhao Q-Y, Wang Y, Kong Y-M, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.