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Mitochondrial DNA Part B
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Volume 4, 2019 - Issue 2
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Mitogenome Announcement

The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)

Jongsun ParkInfoBoss Co., Ltd., Seolleung-ro, Gangnam-gu, Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaCorrespondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-0786-4701View further author information
ORCID Icon,
Yongsung KimInfoBoss Co., Ltd., Seolleung-ro, Gangnam-gu, Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaORCID Iconhttp://orcid.org/0000-0002-5349-9226View further author information
ORCID Icon,
Hong XiInfoBoss Co., Ltd., Seolleung-ro, Gangnam-gu, Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaView further author information
&
Kyeong-In HeoInfoBoss Co., Ltd., Seolleung-ro, Gangnam-gu, Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of KoreaORCID Iconhttp://orcid.org/0000-0002-6951-8102View further author information
ORCID Icon
Pages 2436-2437 | Received 25 May 2019, Accepted 22 Jun 2019, Published online: 16 Jul 2019

References

  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120.
  • Clifford MN. 2012. Coffee: botany, biochemistry and production of beans and beverage. Boston (MA): Springer.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Kwon W, Kim Y, Park J. 2019. The complete chloroplast genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: low genetic diversity between Korea and Japan. Mitochondr DNA B. 4:959–960.
  • Lashermes P, Combes M-C, Robert J, Trouslot P, D'Hont A, Anthony F, Charrier A. 1999. Molecular characterisation and origin of the Coffea arabica L. genome. Mol General Genetics MGG. 261:259–266.
  • Lashermes H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv preprint arXiv. 1303.3997
  • O'brien TG, Kinnaird MF. 2003. Caffeine and conservation. Science 300:587.
  • Park J, Kim Y, Xi H, Heo K-I. 2019. The complete chloroplast genome of ornamental coffee tree, Coffea arabica L. (Rubiaceae). Mitochondr DNA B. 4:1059–1060.
  • Park J, Kim Y, Xi H, Nho M, Woo J, Seo Y. 2019. The complete chloroplast genome of high production individual tree of Coffea arabica L. (Rubiaceae). Mitochondr DNA B. 4:1541–1542.
  • Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019. The complete chloroplast genome of common camellia tree in Jeju island, Korea, Camellia japonica L. (Theaceae): intraspecies variations on common camellia chloroplast genomes. Mitochondr DNA B. 4:1292–1293.
  • Park J, Xi H, Kim Y, Heo K-I, Nho M, Woo J, Seo Y, Yang JH. 2019. The complete chloroplast genome of cold hardiness individual of Coffea arabica L. (Rubiaceae). Mitochondr DNA B. 4:1083–1084.
  • Park J, Kim Y, Xi H, Heo K-I. Under review. The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica Bluemountain’ (Rubiaceae). doi:10.1080/23802359.2019.1636729
  • Samson N, Bausher MG, Lee SB, Jansen RK, Daniell H. 2007. The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms. Plant Biotechnol J. 5:339–353.
  • Teuber R. 2010. Geographical indications of origin as a tool of product differentiation: The case of coffee. J Int Food Agribus Mark. 22:277–298.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.

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