Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 4, 2019 - Issue 2
Submit an article Journal homepage
848
Views
12
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome of candidate new species from Rosa rugosa in Korea (Rosaceae)

Yongsung KimInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of Korea; ORCID Iconhttp://orcid.org/0000-0002-5349-9226View further author information
ORCID Icon,
Kyeong-In HeoInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of Korea; ORCID Iconhttp://orcid.org/0000-0002-6951-8102View further author information
ORCID Icon,
Suhwan NamBaekdudaegan National Arboretum, Gyeongsangbuk-do, Republic of Korea; View further author information
,
Hong XiInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of Korea; View further author information
,
Sangtae LeeDepartment of Biological Sciences, Sungkyunkwan University, Suwon, Republic of KoreaView further author information
&
Jongsun ParkInfoBoss Co., Ltd., Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of Korea; Correspondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-0786-4701View further author information
ORCID Icon
Pages 2433-2435 | Received 29 May 2019, Accepted 22 Jun 2019, Published online: 12 Jul 2019

References

  • Heo K-I, Park J, Kim Y. 2019. The complete chloroplast genome of new variety candidate in Korea, Potentilla freyniana var. chejuensis (Rosoideae). Mitochondrial DNA B. 4:1354–1356.
  • Jeon J-H, Kim S-C. 2019. Comparative analysis of the complete chloroplast genome sequences of three closely related East-Asian Wild Roses (Rosa sect. Synstylae; Rosaceae). Genes. 10:23.
  • Jian H-y, Zhang S-d, Zhang T, Qiu X-q, Yan H-j, Li S-b, Wang Q-g, Tang K-x. 2018. Characterization of the complete chloroplast genome of a critically endangered decaploid rose species, Rosa praelucens (Rosaceae). Conserv Genet Resour. 10:851–854.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30:772–780.
  • Kim Y, Heo K-I, Park J. 2019. The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution. Mitochondrial DNA B. 4:1310–1311.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35:1547–1549.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv Preprint arXiv:13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25:2078–2079.
  • Min J, Park J, Kim Y, Kwon W. 2019. The complete chloroplast genome of Artemisia fukudo Makino (Asteraceae): providing insight of intraspecies variations. Mitochondrial DNA B. 4:1510–1512.
  • Oh S-H, Suh HJ, Park J, Kim Y, Kim S. 2019. The complete chloroplast genome sequence of a morphotype of Goodyera schlechtendaliana (Orchidaceae) with the column appendages. Mitochondrial DNA B. 4:626–627.
  • Park J, Kim Y. 2019. The second complete chloroplast genome of Dysphania pumilio (R. Br.) mosyakin & clemants (Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA B. 4:1428–1429.
  • Park J, Kim Y, Kwon W, Nam S, Song MJ. 2019. The second complete chloroplast genome sequence of Nymphaea alba L. (Nymphaeaceae) to investigate inner-species variations. Mitochondrial DNA B. 4:1014–1015.
  • Park J, Kim Y, Lee K. 2019. The complete chloroplast genome of Korean mock strawberry, Duchesnea chrysantha (Zoll. & Moritzi) Miq. (Rosoideae). Mitochondrial DNA B. 4:864–865.
  • Park J, Kim Y, Xi H. 2019. The complete chloroplast genome of aniseed tree, Illicium anisatum L. (Schisandraceae). Mitochondrial DNA B. 4:1023–1024.
  • Park J, Kim Y, Xi H, Heo K-I. 2019. The complete chloroplast genome of ornamental coffee tree, Coffea arabica L. (Rubiaceae). Mitochondrial DNA B. 4:1059–1060.
  • Park J, Kim Y, Xi H, Nho M, Woo J, Seo Y. 2019. The complete chloroplast genome of high production individual tree of Coffea arabica L. (Rubiaceae). Mitochondrial DNA B. 4:1541–1542.
  • Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019a. The complete chloroplast genome of common camellia tree in Jeju island, Korea, Camellia japonica L. (Theaceae): intraspecies variations on common camellia chloroplast genomes. Mitochondrial DNA Part B. 4:1292–1293.
  • Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019b. The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea. Mitochondrial DNA B. 4:1038–1040.
  • Park J, Xi H, Kim Y, Heo K-I, Nho M, Woo J, Seo Y, Yang JH. 2019. The complete chloroplast genome of cold hardiness individual of Coffea arabica L. (Rubiaceae). Mitochondrial DNA B. 4:1083–1084.
  • Rehder A. 1949. Bibliography of cultivated trees and shrubs hardy in the cooler temperate regions of the northern hemisphere. Jamaica Plain (MA): Arnold Arboretum of Harvard University.
  • Wissemann V, Ritz CM. 2005. The genus Rosa (Rosoideae, Rosaceae) revisited: molecular analysis of nrITS-1 and atp B-rbc L intergenic spacer (IGS) versus conventional taxonomy. Bot J Linn Soc. 147:275–290.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821–829.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12:S2.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.