Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 5, 2020 - Issue 2
Submit an article Journal homepage
676
Views
9
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The comparison of the complete chloroplast genome of Suaeda japonica Makino presenting different external morphology (Amaranthaceae)

Yongsung KimInfoBoss Co., Ltd, Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of Korea; ORCID Iconhttp://orcid.org/0000-0002-5349-9226
ORCID Icon,
Jongsun ParkInfoBoss Co., Ltd, Seoul, Republic of Korea; ;InfoBoss Research Center, Seoul, Republic of Korea; Correspondence[email protected]
ORCID Iconhttp://orcid.org/0000-0003-0786-4701
ORCID Icon &
Youngjae ChungDepartment of Biology, Shingyeong University, Gyeonggi-do, Republic of KoreaCorrespondence[email protected]
Pages 1616-1618 | Received 30 Dec 2019, Accepted 07 Jan 2020, Published online: 31 Mar 2020

References

  • Chung Y. 1992. A taxonomic study of the Korean Chenopodiaceae [PhD thesis]. Seoul (Korea): Sungkyunkwan University (in Korean).
  • Dong W, Xu C, Li D, Jin X, Li R, Lu Q, Suo Z. 2016. Comparative analysis of the complete chloroplast genome sequences in psammophytic Haloxylon species (Amaranthaceae). Peer J. 4:e2699.
  • Hara H, Kurosawa S. 1963. Cytotaxonomical notes on some Japanese plants (2). J Jap Bot. 38:113–116.
  • Hong S-Y, Cheon K-S, Yoo K-O, Lee H-O, Mekapogu M, Cho K-S. 2019. Comparative analysis of the complete chloroplast genome sequences of three Amaranthus species. Plant Genet Resour. 17(3):245–254.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kim B, Kim J, Park H, Park J. 2016. The complete chloroplast genome sequence of Bienertia sinuspersici. Mitochondrial DNA Part B. 1(1):388–389.
  • Kim Y, Park J, Chung Y. 2019. The complete chloroplast genome of Suaeda japonica Makino (Amaranthaceae). Mitochondrial DNA Part B. 4(1):1505–1507.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Kwon W, Kim Y, Park J. 2019a. The complete chloroplast genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: low genetic diversity between Korea and Japan. Mitochondrial DNA Part B. 4(1):959–960.
  • Kwon W, Kim Y, Park J. 2019b. The complete mitochondrial genome of Korean Marchantia polymorpha subsp. ruderalis Bischl. & Boisselier: inverted repeats on mitochondrial genome between Korean and Japanese isolates. Mitochondrial DNA Part B. 4(1):769–770.
  • Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv. 13033997.
  • Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. 2009. The sequence alignment/map format and SAMtools. Bioinformatics. 25(16):2078–2079.
  • Min J, Kim Y, Xi H, Heo K-I, Park J. 2019. The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae). Mitochondrial DNA Part B. 4(2):2240–2241.
  • Min J, Kim Y, Xi H, Jang T, Kim G, Park J, Park J-H. 2019. The complete chloroplast genome of a new candidate cultivar, Sang Jae, of Abeliophyllum distichum Nakai (Oleaceae): initial step of A. distichum intraspecies variations atlas. Mitochondrial DNA Part B. 4(2):3716–3718.
  • Park J, Kim Y. 2019. The second complete chloroplast genome of Dysphania pumilio (R. Br.) mosyakin & clemants (Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA B. 4:1428–1429.
  • Park J, Kim Y, Xi H, Heo K-I. 2019. The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae). Mitochondrial DNA Part B. 4(2):2436–2437.
  • Park J, Kim Y, Xi H, Nho M, Woo J, Seo Y. 2019. The complete chloroplast genome of high production individual tree of Coffea arabica L. (Rubiaceae). Mitochondrial DNA Part B. 4(1):1541–1542.
  • Park J, Kim Y, Xi H, Oh YJ, Hahm KM, Ko J. 2019. The complete chloroplast genome of common camellia tree in Jeju island, Korea, Camellia japonica L.(Theaceae): intraspecies variations on common camellia chloroplast genomes. Mitochondrial DNA Part B. 4(1):1292–1293.
  • Park J, Xi H, Kim Y, Heo K-I, Nho M, Woo J, Seo Y, Yang JH. 2019. The complete chloroplast genome of cold hardiness individual of Coffea arabica L.(Rubiaceae). Mitochondrial DNA Part B. 4(1):1083–1084.
  • Park J-S, Choi I-S, Lee D-H, Choi B-H. 2018. The complete plastid genome of Suaeda malacosperma (Amaranthaceae/Chenopodiaceae), a vulnerable halophyte in coastal regions of Korea and Japan. Mitochondrial DNA Part B. 3(1):382–383.
  • Yang Z, Zhang Y, Pan L, Fu C. 2018. Characterization of the complete chloroplast genome of Gymnocarpos przewalskii, an endangered species in China and Mongolia. Conservation Genet Resour. 10(4):717–721.
  • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research. 18(5):821–829.
  • Zhao Q-Y, Wang Y, Kong Y-M, Luo D, Li X, Hao P. 2011. Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study. BMC Bioinformatics. 12(Suppl 14):S2.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.