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Mitogenome Announcement

Complete chloroplast genome of the mixotrophic chrysophyte Poterioochromonas malhamensis (Ochromonadales, Synurophyceae) from Van Lake in Eastern Anatolia

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Pages 2719-2721 | Received 04 Dec 2020, Accepted 24 Apr 2021, Published online: 27 Aug 2021

References

  • Bankevich A, Nurk S, Antipov D, Gurevich A, Dvorkin M, Kulikov AS, Lesin V, Nikolenko S, Pham S, Prjibelski A, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in largescale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Stamatakis A. 2014. RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30:1312–1313.
  • Dorrell RG, Azuma T, Nomura M, Audren de Kerdrel G, Paoli L, Yang S, Bowler C, Ishii K-I, Miyashita H, Gile GH, et al. 2019. Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes. Proc Natl Acad Sci USA. 116(14):6914–6923.
  • Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus. 12:13–15.
  • Gordon D, Green P. 2013. Consed: a graphical editor for next-generation sequencing. Bioinformatics. 29(22):2936–2937.
  • Graupner N, Jensen M, Bock C, Marks S, Rahmann S, Beisser D, Boenigk J. 2018. Evolution of heterotrophy in chrysophytes as reflected by comparative transcriptomics. FEMS Microbiol Ecol. 94(4):fiy039.
  • Holen DA. 1999. Effects of prey abundance and light intensity on the mixotrophic chrysophyte Poterioochromonas malhamensis from a mesotrophic lake. Freshw Biol. 42(3):445–455.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kauss H. 1974. Osmoregulation in Ochromonas. In: Zimmermann U, Dainty J, editors. Membrane transport in plants. Berlin, Heidelberg: Springer.
  • Kim JI, Shin H, Škaloud P, Jung J, Yoon HS, Archibald JM, Shin W. 2019. Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation. BMC Evol Biol. 19(1):20.
  • Ma M, Gong Y, Hu Q. 2018. Identification and feeding characteristics of the mixotrophic flagellate Poterioochromonas malhamensis, a microalgal predator isolated from outdoor massive Chlorella culture. Algal Res. 29:142–153.
  • Ma M, Yuan D, He Y, Park M, Gong Y, Hu Q. 2017. Effective control of Poterioochromonas malhamensis in pilot-scale culture of Chlorella sorokiniana GT-1 by maintaining CO2-mediated low culture pH. Algal Res. 26:436–444.
  • Pringsheim EG. 1952. On the nutrition of Ochromonas. Q J Microsc Soc. 93:71–96.
  • Ševčíková T, Horák A, Klimeš V, Zbránková V, Demir-Hilton E, Sudek S, Jenkins J, Schmutz J, Přibyl P, Fousek J, et al. 2015. Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte? Sci Rep. 5:10134.
  • Turmel M, Lemieux C. 2018. Evolution of the plastid genome in green algae. In: Chaw S-M, Jansen RJ, editors. Advances in botanical research. Plastid genome evolution. Vol. 85. London, England: Academic Press; p. 157–193.
  • Turmel M, Otis C, Lemieux C. 2017. Divergent copies of the large inverted repeat in the chloroplast genomes of ulvophycean green algae. Sci Rep. 7:994.
  • Zhang X, Watanabe MM. 2001. Grazing and growth of the mixotrophic chrysomonad Poterioochromonas malhamensis (Chrysophyceae) feeding on algae. J Phycol. 37(5):738–743.
  • Zhang X, Watanabe MM, Inouye I. 1996. Light and electron microscopy of grazing by Poterioochromonas malhamensis (Chrysophyceae) on a range of phytoplankton taxa. J Phycol. 32(1):37–46.