1,113
Views
2
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Complete mitochondrial genome of the ragworm annelid Hediste diversicolor (of Müller, 1776) (Annelida: Nereididae)

ORCID Icon, , , , , ORCID Icon & show all
Pages 2849-2851 | Received 08 Jun 2021, Accepted 15 Aug 2021, Published online: 06 Sep 2021

References

  • Alves PR, Halanych KM, Santos CSG. 2020. The phylogeny of Nereididae (Annelida) based on mitochondrial genomes. Zool Scr. 49(3):366–378.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Capella-Gutiérrez S, Silla-Martínez JM, Gabaldón T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Cardinaletti G, Mosconi G, Salvatori R, Lanari D, Tomassoni D, Carnevali O, Polzonetti-Magni AM. 2009. Effect of dietary supplements of mussel and polychaetes on spawning performance of captive sole, Solea solea (Linnaeus, 1758). Anim Reprod Sci. 113(1–4):167–176.
  • Geoffrey R. 2018. Taxon details of Hediste diversicolor (O.F. Müller, 1776). World register of marine species (WoRMS); [accessed 2021 Aug]. https://www.marinespecies.org/aphia.php?p=taxdetails&id=152302#distributions.
  • Jin JJ, Yu W, Bin Yang JB, Song Y, Depamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241.
  • Kabeya N, Gür İ, Oboh A, Evjemo JO, Malzahn AM, Hontoria F, Navarro JC, Monroig Ó. 2020. Unique fatty acid desaturase capacities uncovered in Hediste diversicolor illustrate the roles of aquatic invertebrates in trophic upgrading. Philos Trans R Soc Lond B Biol Sci. 375(1804):20190654.
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, Von Haeseler A, Jermiin LS. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589.
  • Kim H, Jung G, Lee YC, Pae SJ, Kim CG, Lee YH. 2015. The complete mitochondrial genome of the marine polychaete: Perinereis aibuhitensis (Phyllodocida, Nereididae). Mitochondrial DNA. 26(6):869–870.
  • Kim H, Kim HJ, Lee YH. 2016. The complete mitochondrial genome of the marine polychaete: Hediste diadroma (Phyllodocida, Nereididae). Mitochondrial DNA Part B. 1(1):822–823.
  • Lanfear R, Frandsen P B, Wright AM, Senfeld T, Calcott B, 2016. PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses. Molecular Biology and Evolution 34, msw260. https://doi.org/https://doi.org/10.1093/molbev/msw260
  • Liu M, Liu H, Wang Q, Guan S, Ge S. 2012. Phylogenetic relationships of twenty-one nereids species inferring two different evolutionary origins? Aquat Sci Technol. 1(1):167–180.
  • Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Nygren A. 2014. Cryptic polychaete diversity: a review. Zool Scr. 43(2):172–183.
  • Park HS, Nam S-E, Rhee J-S. 2020. Complete mitochondrial genome of the marine polychaete Hediste japonica (Phyllodocida, Nereididae). Mitochondrial DNA Part B. 5(1):850–851.
  • Pombo A, Baptista T, Granada L, Ferreira SMF, Gonçalves SC, Anjos C, Sá E, Chainho P, Cancela da Fonseca L, Fidalgo e Costa P, et al. 2020. Insight into aquaculture’s potential of marine annelid worms and ecological concerns: a review. Rev Aquacult. 12(1):107–121.
  • Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, De Jong P, Weissenbach J, et al. 2005. Evolution: vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science. 310(5752):1325–1326.
  • Rivera AS, Weisblat DA. 2009. And Lophotrochozoa makes three: Notch/Hes signaling in annelid segmentation. Dev Genes Evol. 219(1):37–43.
  • Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
  • Sato M, Nakashima A. 2003. A review of Asian Hediste species complex (Nereididae, Polychaeta) with descriptions of two new species and a redescription of Hediste japonica (Izuka, 1908). Zool J Linn Soc. 137(3):403–445.
  • Sela I, Ashkenazy H, Katoh K, Pupko T. 2015. GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. Nucleic Acids Res. 43(W1):W7–W14.
  • Struck TH, Paul C, Hill N, Hartmann S, Hösel C, Kube M, Lieb B, Meyer A, Tiedemann R, Purschke G, et al. 2011. Phylogenomic analyses unravel annelid evolution. Nature. 471(7336):95–98.
  • Tessmar-Raible K, Arendt D. 2003. Emerging systems: between vertebrates and arthropods, the Lophotrochozoa. Curr Opin Genet Dev. 13(4):331–340.
  • Wang H, Hagemann A, Malzahn AM, Handå A, Uhre M, Kjørsvik E, Reitan KI. 2020a. The role of manipulating photoperiod and temperature in oocyte development of the polychaete Hediste diversicolor (O.F. Müller, 1976). Front Mar Sci. 7:1080.
  • Wang H, Hagemann A, Reitan KI, Handå A, Uhre M, Malzahn AM. 2020b. Embryonic and larval development in the semelparous Nereid polychaete Hediste diversicolor (OF Müller, 1776) in Norway: challenges and perspectives. Aquacult Res. 51(10):4135–4151.
  • Wang H, Seekamp I, Malzahn A, Hagemann A, Carvajal AK, Slizyte R, Standal IB, Handå A, Reitan KI. 2019. Growth and nutritional composition of the polychaete Hediste diversicolor (OF Müller, 1776) cultivated on waste from land-based salmon smolt aquaculture. Aquaculture. 502:232–241.
  • Weigert A, Bleidorn C. 2016. Current status of annelid phylogeny. Org Divers Evol. 16:345–362.
  • Weigert A, Golombek A, Gerth M, Schwarz F, Struck TH, Bleidorn C. 2016. Evolution of mitochondrial gene order in Annelida. Mol Phylogenet Evol. 94(Pt A):196–206.