References
- Dierckxsens N, Mardulyn P, Smits G. 2016. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45:e18.
- Favre A, Michalak I, Chen C‐H, Wang J‐C, Pringle JS, Matuszak S, Sun H, Yuan Y‐M, Struwe L, Muellner‐Riehl AN, et al. 2016. Out-of-Tibet: the spatio-temporal evolution of Gentiana (Gentianaceae). J Biogeogr. 43(10):1967–1978.
- Favre A, Pringle JS, Heckenhauer J, Kozuharova E, Gao Q, Lemmon EM, Lemmon AR, Sun H, Tkach N, Gebauer S, et al. 2020. Phylogenetic relationships and sectional delineation within Gentiana (Gentianaceae). Taxon. 69(6):1221–1238.
- Frazer KA, Pachter L, Poliakov A, Rubin EM, Dubchak I. 2004. VISTA: computational tools for comparative genomics. Nucleic Acids Res. 32(Web Server issue):W273–W279.
- Fu P-C, Sun S-S, Twyford AD, Li B-B, Zhou R-Q, Chen S-L, Gao Q-B, Favre A. 2021. Lineage-specific plastid degradation in subtribe Gentianinae (Gentianaceae). Ecol Evol. 11(7):3286–3299.
- Fu PC, Zhang YZ, Geng HM, Chen SL. 2016. Thse complete chloroplast genome sequence of Gentiana lawrencei var. farreri (Gentianaceae) and comparative analysis with its congeneric species. PeerJ. 4:e2540.
- Ho TN, Liu SW. 2001. A worldwide monograph of Gentiana. Beijing: Science Press.
- Katoh K, Misawa K, Kuma K, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
- Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
- She RX, Li W, Xie X, Liu M, Zhao P. 2019. The complete nucleotide sequence of chloroplast genome of Gentiana apiata (Gentianaceae), an endemic medicinal herb in China. Mitochondrial DNA Part B. 4(2):2596–2597.
- Sun SS, Fu PC, Zhou XJ, Cheng YW, Zhang FQ, Chen SL, Gao QB. 2018. The complete plastome sequences of seven species in Gentiana sect. Kudoa (Gentianaceae): insights into plastid gene loss and molecular evolution. Front Plant Sci. 9:493.
- Sun SS, Wang H, Fu PC. 2019a. Complete plastid genome of Gentiana trichotoma (Gentianaceae) and phylogenetic analysis. Mitochondrial DNA Part B. 4(2):2775–2776.
- Sun SS, Zhou XJ, Li ZZ, Song HY, Long ZC, Fu PC. 2019b. Intra-individual heteroplasmy in the Gentiana tongolensis plastid genome (Gentianaceae). PeerJ. 7:e8025.
- Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.
- Zhang D, Gao F, Li WX, Jakovlić I, Zou H, Zhang J, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.
- Zhou T, Wang J, Jia Y, Li W, Xu F, Wang X. 2018. Comparative chloroplast genome analyses of species in Gentiana section Cruciata (Gentianaceae) and the development of authentication markers. Inter J Mol Sci. 19:1962.