710
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The first complete plastome sequence from family Flagellariaceae (Flagellaria indica L., Poales)

, , &
Pages 3164-3165 | Received 28 Jul 2021, Accepted 27 Sep 2021, Published online: 07 Oct 2021

References

  • APG IV. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Bot J Linn Soc. 181(1):1–20.
  • Bouchenak-Khelladi Y, Muasya AM, Linder HP. 2014. A revised evolutionary history of Poales: origins and diversification. Bot J Linn Soc. 175(1):4–16.
  • Christenhusz MJM, Fay MF, Chase MW. 2018. Plants of the World: an illustrated encyclopedia of vascular plants. Richmond: Kew Publishing.
  • Darshetkar AM, Datar MN, Tamhankar S, Li P, Choudhary RK. 2019. Understanding evolution in Poales: insights from Eriocaulaceae plastome. PLOS One. 14(8):e0221423.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo C, Honji Y, Sun CR, Meng BY. 1989. The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol Gen Genet. 217(2–3):185–194.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
  • Leese F, Mayer C, Held C. 2008. Isolation of microsatellites from unknown genomes using known genomes as enrichment templates. Limnol Oceanogr Methods. 6(9):412–426.
  • Linder HP, Rudall PJ. 2005. Evolutionary history of Poales. Annu Rev Ecol Evol Syst. 36(1):107–124.
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25(5):955–964.
  • Ogihara Y, Isono K, Kojima T, Endo A, Hanaoka M, Shiina T, Terachi T, Utsugi S, Murata M, Mori N, et al. 2002. Structural features of a wheat plastome as revealed by complete sequencing of chloroplast DNA. Mol Genet Genomics. 266(5):740–746.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313.
  • Wepfer PH, Linder HP. 2014. The taxonomy of Flagellaria (Flagellariaceae). Aust Syst Bot. 27(3):159–179.
  • Wysocki WP, Burke SV, Swingley WD, Duvall MR. 2016. The first complete plastid genome from Joinvilleaceae (J. ascendens; Poales) shows unique and unpredicted rearrangements. PLOS One. 11(9):e0163218.