Genetic identification of marine eels (Anguilliformes: Congroidei) through DNA barcoding from Kasimedu fishing harbour

References

• Amir OA, Berggren P, Ndaro SGM, Jiddawi NS. 2005. Feeding ecology of the Indo-Pacific bottlenose dolphin (Tursiops aduncus) incidentally caught in the gillnet fisheries off Zanzibar, Tanzania. Estuar Coast Shelf Sci. 63(3):429–437.
   Web of Science ®Google Scholar
• Austerlitz F, David O, Schaeffer B, Bleakley K, Olteanu M, Leblois R, Veuille M, Laredo C. 2009. DNA barcode analysis: a comparison of phylogenetic and statistical classification methods. BMC Bioinf. 10(S14):S10.
   PubMedGoogle Scholar
• Bowler DE, Benton TG. 2009. Variation in dispersal mortality and dispersal propensity among individuals: the effects of age, sex and resource availability. J Anim Ecol. 78(6):1234–1241.
   PubMed Web of Science ®Google Scholar
• Carpenter KE, Niem VH. (eds). 1999. FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific. Volume 4. Bony fishes part 2 (Mugilidae to Carangidae). Rome: FAO. p. 2069–2790.
   Google Scholar
• Clobert J, Le Galliard JF, Cote J, Meylan S, Massot M. 2009. Informed dispersal, heterogeneity in animal dispersal syndromes and the dynamics of spatially structured populations. Ecol Lett. 12(3):197–209.
   PubMed Web of Science ®Google Scholar
• Das MK, Mohapatra A, Rajendar RK, Bhaskar R. 2020. A new species Ophichthuschennaiensis sp. nov. (Anguilliformes: Ophichthidae) from the southeast coast of India. Zootaxa. 4895(2):291–296.
   Web of Science ®Google Scholar
• De Brito MA, Schneider H, Sampaio I, Santos S. 2015. DNA barcoding reveals high substitution rate and mislabeling in croaker fillets (Sciaenidae) marketed in Brazil: the case of “pescadabranca” (Cynoscionleiarchus and Plagiosdonsquamosissimus). Food Res Int. 70:40–46.
   Web of Science ®Google Scholar
• Hall TA. 1999. BioEdit: A user‐friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser. 41:95–98.
   Google Scholar
• Hanzen C, Lucas MC, O'Brien G, Downs CT, Willows-Munro S. 2020. African freshwater eel species (Anguilla spp.) identification through DNA barcoding. Mar Freshwater Res. 71(11):1543–1548.
   Web of Science ®Google Scholar
• Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E, Burridge M, Watkinson D, Dumont P, Curry A, Bentzen P, Zhang J, et al. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PLOS One. 3(6):e2490.
   PubMed Web of Science ®Google Scholar
• Hubert N, Meyer CP, Bruggemann HJ, Guérin F, Komeno RJL, Espiau B, Causse R, Williams JT, Planes S. 2012. Cryptic diversity in Indo-Pacific coral-reef fishes revealed by DNA-barcoding provides new support to the centre-of-overlap hypothesis. PLOS One. 7(3):e28987.
   PubMed Web of Science ®Google Scholar
• Ji HS, Lee HW, Hong BK, Kim JK. 2012. Four newly reported ophichthid leptocephali species revealed by mitochondrial 12S rDNA, with implications of their occurrence in Korea. Anim Cell Syst. 16(5):415–424.
   Web of Science ®Google Scholar
• Knowlton N, Weigt LA. 1998. New dates and new rates for divergence across the Isthmus of Panama. Proc R Soc Lond B. 265(1412):2257–2263.
   Web of Science ®Google Scholar
• Kundu S, Rath S, Laishram K, Pakrashi A, Das U, Tyagi K, Kumar V, Chandra K. 2019. DNA barcoding identified selected ornamental fishes in Murti river of East India. Mitochondr DNA B Res. 4(1):594–598.
   Web of Science ®Google Scholar
• Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
   PubMed Web of Science ®Google Scholar
• Kvie KS, Hogner S, Aarvik L, Lifjeld JT, Johnsen A. 2012. Deep sympatric mtDNA divergence in the autumnal moth (Epirrita autumnata). Ecol Evol. 3(1):126–144.
   PubMed Web of Science ®Google Scholar
• Lakra WS, Singh M, Goswami M, Gopalakrishnan A, Lal KK, Mohindra V, Sarkar UK, Punia PP, Singh KV, Bhatt JP, et al. 2016. DNA barcoding Indian freshwater fishes. Mitochondrial DNA A DNA Mapp Seq Anal. 27(6):4510–4517.
   PubMedGoogle Scholar
• Ma T, Aoyama J, Miller MJ, Minegishi Y, Inoue JG, Tsukamoto K. 2008. Katsumi Tsukamoto1Genetic differentiation in the genus Uroconger in the Indo-Pacific region. Aquat Biol. 2:29–35.
   Web of Science ®Google Scholar
• Magoga G, Fontaneto D, Montagna M. 2021. Factors affecting the efficiency of molecular species delimitation in a species-rich insect family. Mol Ecol Resour. 21(5):1475–1415.
   PubMed Web of Science ®Google Scholar
• McCosker JE. 2010. Deepwater Indo-Pacific species of the snake-eel genus Ophichthus (Anguilliformes: Ophichthidae), with the description of nine new species. Zootaxa. 2505(1):1–39.
   Google Scholar
• McCosker John F, Paxton JR, Eschmeyer WN. (eds.) 1998. Encyclopedia of fishes. San Diego: Academic Press. p. 89. ISBN 0-12-547665-5.
   Google Scholar
• Mehta RS. 2009. Ecomorphology of the moray bite: relationship between dietary extremes and morphological diversity. Physiol Biochem Zool. 82(1):90–103.
   PubMed Web of Science ®Google Scholar
• Muchlisin ZA, Nurfadillah N, Arisa II, Rahmah A, Putra DF, Nazir M, Zulham A. 2017. Fish fauna of Lake LauikTawar and Lake Laulo, Simeulue Island, Indonesia. Biodiversitas. 18(2):752–757.
   Google Scholar
• Peninal S, Subramanian J, Elavarasi A, Kalaiselvam M. 2017. Genetic identification of marine eels through DNA barcoding from Parangipettai coastal waters. Genom Data. 11:81–84.
   PubMedGoogle Scholar
• Pereira LH, Hanner R, Foresti F, Oliveira C. 2013. Can DNA barcoding accurately discriminate megadiverse Neotropical freshwater fish fauna? BMC Genet. 14(1):20.
   PubMedGoogle Scholar
• Puillandre N, Brouillet S, Achaz G. 2021. ASAP: assemble species by automatic partitioning. Mol Ecol Resour. 21(2):609–620. doi:https://doi.org/10.1111/1755-0998.13281.
   PubMed Web of Science ®Google Scholar
• Rambaut A. 2012. FigTree v.1.4.2: Tree Figure Drawing Tool. http://tree.bio.ed.ac.uk/software/figtree
   Google Scholar
• Ratnasingham S, Hebert PDN. 2007. BOLD: The barcode of life data system (http://www.barcodinglife.org). Mol Ecol Notes. 7(3):355–364. ‐
   PubMed Web of Science ®Google Scholar
• Ratnasingham S, Hebert PDN. 2013. A DNA-based registry for all animal species: the barcode index number (BIN) system. PLOS One. 8(7):e66213.
   PubMed Web of Science ®Google Scholar
• Ronquist F, Huelsenbeck JP. 2003. Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19(12):1572–1574.
   PubMed Web of Science ®Google Scholar
• Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542.
   PubMed Web of Science ®Google Scholar
• Ruzzante DE, Taggart C, Cook D, Goddard S. 1996. Genetic differentiation between inshore and offshore Atlantic cod (Gadusmorhua) of Newfoundland: microsatellite DNA variation and antifreeze level. Can J Fish Aquat Sci. 53(3):634–645.
   Web of Science ®Google Scholar
• Saccone C, De Giorgi C, Gissi C, Pesole G, Reyes A. 1999. Evolutionary genomics in the Metazoa: the mitochondrial DNA as a model system. Gene. 238(1):195–210.
   PubMed Web of Science ®Google Scholar
• Sarkar T. 2018. Small indigenous fish species (SIS) diversity in the River Teesta, Jaldhaka and Torsa, West Bengal, India. Int J Fish Aquat Res. 3:01–05.
   Google Scholar
• Smith DG. 1989a. Family congridae. In: Böhlke EB (ed) Fishes of the western North Atlantic, Part 9, Vol 1: Orders Anguilliformes and Saccopharyngiformes. New Haven (CT): Sears Foundation for Marine Research; p. 460–567.
   Google Scholar
• Tang KL, Fielitz C. 2013. Phylogeny of moray eels (Anguilliformes: Muraenidae), with a revised classification of true eels (Teleostei: Elopomorpha: Anguilliformes). Mitochondrial DNA. 24(1):55–66.
   PubMed Web of Science ®Google Scholar
• Thomson JM. 1997. The Mugillidae of the world. Mem. Queensland. Mus. 41:457–562.
   Google Scholar
• Ward RD, Costa FO, Holmes BH, Steinke D. 2008. DNA barcoding of shared fish species from the North Atlantic and Australasia: minimal divergence for most taxa, but Zeus faber and Lepidopuscaudatus each probably constitute two species. Aquat Biol. 3:71–78.
   Web of Science ®Google Scholar
• Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PD. 2005. DNA barcoding Australia’s fish species. Philos Trans R Soc Lond B Biol Sci. 360(1462):1847–1857.
   PubMed Web of Science ®Google Scholar