Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 7, 2022 - Issue 1
Submit an article Journal homepage
869
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The whole chloroplast genome of Secale strictum subsp. kuprijanovii, a wild and perennial kinship to cultivated rye

Yuwen DingInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Yiyu HuInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
,
Longjiang FanInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaView further author information
&
Qinjie ChuInstitute of Crop Sciences, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, ChinaCorrespondence[email protected]
View further author information
Pages 112-114 | Received 30 Jun 2021, Accepted 09 Nov 2021, Published online: 23 Dec 2021

References

  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Evtushenko EV, Elisafenko EA, Gatzkaya SS, Lipikhina YA, Houben A, Vershinin AV. 2017. Conserved molecular structure of the centromeric histone CENH3 in Secale and its phylogenetic relationships. Sci Rep. 7(1):17628.
  • Frederiksen S, Petersen G. 1998. A taxonomic revision of Secale (Triticeae, Poaceae). Nord J Bot. 18(4):399–420.
  • Hagenblad J, Oliveira HR, Forsberg NEG, Leino MW. 2016. Geographical distribution of genetic diversity in Secale landrace and wild accessions. BMC Plant Biol. 16(1):1–20.
  • Katoh K, Misawa K, Kuma KI, Miyata T. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30(14):3059–3066.
  • Letunic I, Bork P. 2019. Interactive Tree of Life (iTOL) v4: recent updates and new developments. Nucleic Acids Res. 47(W1):W256–W259.
  • Maraci Ö, Özkan H, Bilgin R. 2018. Phylogeny and genetic structure in the genus Secale. PLoS One. 13(7):e0200825.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Patel RK, Jain M. 2012. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One. 7(2):e30619.
  • Ren TH, Chen F, Zou YT, Jia YH, Zhang HQ, Yan BJ, Ren ZL. 2011. Evolutionary trends of microsatellites during the speciation process and phylogenetic relationships within the genus Secale. Genome. 54(4):316–326.
  • Singh AK, Zhang P, Dong C, Li J, Singh S, Trethowan R, Sharp P. 2021. Generation and molecular marker and cytological characterization of wheat - Secale strictum subsp. anatolicum derivatives . Genome. 64(1):29–38.
  • Sugiura M. 2003. History of chloroplast genomics. Photosynth Res. 76(1–3):371–377.
  • Tillich M, Lehwark P, Pellizzer T, Ulbricht-Jones ES, Fischer A, Bock R, Greiner S. 2017. GeSeq – versatile and accurate annotation of organelle genomes. Nucleic Acids Res. 45(W1):W6–W11.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.