778
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete chloroplast genome sequence of Quercus sessilifolia Blume (Fagaceae)

, , ORCID Icon, , , & show all
Pages 182-184 | Received 08 Aug 2021, Accepted 08 Dec 2021, Published online: 10 Jan 2022

References

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Bi G, Mao Y, Xing Q, Cao M. 2018. HomBlocks: a multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching. Genomics. 110(1):18–22.
  • Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. 2011. Scaffolding pre-assembled contigs using SSPACE. Bioinformatics. 27(4):578–579.
  • Deng M, Jiang XL, Hipp AL, Manos PS, Hahn M. 2018. Phylogeny and biogeography of East Asian evergreen oaks (Quercus section Cyclobalanopsis; Fagaceae): insights into the Cenozoic history of evergreen broad-leaved forests in subtropical Asia. Mol Phylogenet Evol. 119:170–181.
  • Doyle JJ, Doyle JL. 1990. Isolation of plant DNA from fresh tissue. Focus. 12(13):39–40.
  • Hyatt D, Chen GL, LoCascio PF, Land ML, Larimer FW, Hauser LJ. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics. 11:119.
  • Johnson LS, Eddy SR, Portugaly E. 2010. Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics. 11:431.
  • Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32(1):11–16.
  • Nadalin F, Vezzi F, Policriti A. 2012. GapFiller: a de novo assembly approach to fill the gap within paired reads. BMC Bioinf. 13(S14):S8.
  • Silvestro D, Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Org Divers Evol. 12(4):335–337.
  • Tamaki I, Okada M. 2014. Genetic admixing of two evergreen oaks, Quercus acuta and Q. sessilifolia (subgenus Cyclobalanopsis), is the result of interspecific introgressive hybridization. Tree Genet Genomes. 10(4):989–999.