Advanced search
Publication Cover
Mitochondrial DNA Part B
Resources
Volume 7, 2022 - Issue 4
Submit an article Journal homepage
761
Views
1
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

The complete mitochondrial genome sequence of the fairy ring-forming fungus Lepista sordida

Jae-Hoon Choia Research Institute of Green Science and Technology, Shizuoka University, Suruga-ku, Japan;b Graduate School of Science and Technology, Shizuoka University, Suruga-ku, Japan;c Graduate School of Integrated Science and Technology, Shizuoka University, Suruga-ku, JapanORCID Iconhttps://orcid.org/0000-0003-1917-9533View further author information
ORCID Icon,
Tomohiro Suzukid Center for Bioscience Research and Education, Utsunomiya University, Utsunomiya, JapanORCID Iconhttps://orcid.org/0000-0002-2444-5288View further author information
ORCID Icon,
Akiko Onod Center for Bioscience Research and Education, Utsunomiya University, Utsunomiya, JapanORCID Iconhttps://orcid.org/0000-0001-9099-0762View further author information
ORCID Icon,
Mihaya Kotajimab Graduate School of Science and Technology, Shizuoka University, Suruga-ku, JapanView further author information
,
Yuki Tanakad Center for Bioscience Research and Education, Utsunomiya University, Utsunomiya, JapanORCID Iconhttps://orcid.org/0000-0002-3951-5306View further author information
ORCID Icon,
Toshiyuki Suzukid Center for Bioscience Research and Education, Utsunomiya University, Utsunomiya, JapanView further author information
,
Hirokazu Kawagishia Research Institute of Green Science and Technology, Shizuoka University, Suruga-ku, Japan;b Graduate School of Science and Technology, Shizuoka University, Suruga-ku, Japan;c Graduate School of Integrated Science and Technology, Shizuoka University, Suruga-ku, JapanORCID Iconhttps://orcid.org/0000-0001-5782-4981View further author information
ORCID Icon &
Hideo Dohraa Research Institute of Green Science and Technology, Shizuoka University, Suruga-ku, Japan;c Graduate School of Integrated Science and Technology, Shizuoka University, Suruga-ku, JapanCorrespondence[email protected]
ORCID Iconhttps://orcid.org/0000-0002-3919-3538View further author information
ORCID Icon show all
Pages 712-714 | Received 20 Oct 2021, Accepted 11 Apr 2022, Published online: 25 Apr 2022

References

  • Alvarado P, Moreno G, Vizzini A, Consiglio G, Manjon JL, Setti L. 2015. Atractosporocybe, Leucocybe and Rhizocybe: three new clitocyboid genera in the Tricholomatoid clade (Agaricales) with notes on Clitocybe and Lepista. Mycologia. 107(1):123–136.
  • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120.
  • Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics. 25(15):1972–1973.
  • Choi JH, Abe N, Tanaka H, Fushimi K, Nishina Y, Morita A, Kiriiwa Y, Motohashi R, Hashizume D, Koshino H, et al. 2010a. Plant-growth regulator, imidazole-4-carboxamide, produced by the fairy ring forming fungus Lepista sordida. J Agric Food Chem. 58(18):9956–9959.
  • Choi JH, Fushimi K, Abe N, Tanaka H, Maeda S, Morita A, Hara M, Motohashi R, Matsunaga J, Eguchi Y, et al. 2010b. Disclosure of the "fairy" of fairy-ring-forming fungus Lepista sordida. Chembiochem. 11(10):1373–1377.
  • Choi JH, Ohnishi T, Yamakawa Y, Takeda S, Sekiguchi S, Maruyama W, Yamashita K, Suzuki T, Morita A, Ikka T, et al. 2014. The source of "fairy rings": 2-azahypoxanthine and its metabolite found in a novel purine metabolic pathway in plants. Angew Chem Int Ed Engl. 53(6):1552–1555.
  • Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, et al. 2015. The khmer software package: enabling efficient nucleotide sequence analysis. F1000Res. 4:900.
  • Dierckxsens N, Mardulyn P, Smits G. 2017. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Res. 45(4):e18.
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS. 2018. UFBoot2: improving the ultrafast bootstrap approximation. Mol Biol Evol. 35(2):518–522.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Kawagishi H. 2018. Fairy chemicals - a candidate for a new family of plant hormones and possibility of practical use in agriculture. Biosci Biotechnol Biochem. 82(5):752–758.
  • Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, et al. 2012. Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 28(12):1647–1649.
  • Kirk P, Cannon P, Minter D, Stalpers J. 2008. Ainsworth and Bisby’s dictionary of the fungi, 10th ed. Wallingford: CAB International.
  • Nguyen LT, Schmidt HA, von Haeseler A, Minh BQ. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274.
  • Suzuki T, Yamamoto N, Choi JH, Takano T, Sasaki Y, Terashima Y, Ito A, Dohra H, Hirai H, Nakamura Y, et al. 2016. The biosynthetic pathway of 2-azahypoxanthine in fairy-ring forming fungus. Sci Rep. 6:39087.
  • Takano T, Yamamoto N, Suzuki T, Dohra H, Choi JH, Terashima Y, Yokoyama K, Kawagishi H, Yano K. 2019. Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants. Sci Rep. 9(1):5888.
  • Tanaka Y, Suzuki T, Kurokura T, Iigo M, Toyama F, Habu N, Dohra H, Konno N. 2017. The complete genome sequence and phylogenetic analysis of the mitochondrial DNA of the wood-decaying fungus Fomitopsis palustris. Genes Genom. 39(12):1377–1385.
  • Wang SY, Guo HB, Li JJ, Li W, Wang Q, Yu XD. 2019. Evaluation of five regions as DNA barcodes for identification of Lepista species (Tricholomataceae, Basidiomycota) from China. PeerJ. 7:e7307.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.