587
Views
0
CrossRef citations to date
0
Altmetric
Mitogenome Announcement

Phylogenetic relationship and characterization of the complete mitochondrial genome sequence of Opsarius caudiocellatus (Cypriniformes: Danionidae: Chedrinae)

ORCID Icon, ORCID Icon, &
Pages 2051-2055 | Received 19 Aug 2022, Accepted 19 Nov 2022, Published online: 07 Dec 2022

References

  • Andrews S. 2015. FastQC: a quality control tool for high throughput sequence data. Available from http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
  • Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Chang CH, Tsai CL, Jang-Liaw NH. 2013. Complete mitochondrial genome of the Chinese rasbora Rasbora steineri (Teleostei, Cyprinidae). Mitochondrial DNA. 24(3):183–185.
  • Chen XJ, Song L, Liu WZ, Gao P. 2022. Characterization of the complete mitochondrial genome and phylogenetic analysis of Opsarius pulchellus (Cypriniformes, Danionidae, Chedrinae). Mitochondrial DNA B. 7(4):666–668.
  • Chu XL. 1984. Provisional revision of the genus Barilius in China (Pisces: Cyprinidae). Zool Res. 5(1):95–102.
  • Greiner S, Lehwark P, Bock R. 2019. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Res. 47(W1):W59–W64. doi:10.1093/nar/gkz238.
  • Howes GJ. 1980. The anatomy, phylogeny, and classification of bariliine cyprinid fishes. Bull Br Mus (Nat Hist) Zool. 37:129–198.
  • Kumar S, Stecher G, Li M, Knyaz C, Tamura K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 35(6):1547–1549.
  • Kusuma WE, Kumazawa Y. 2016. Complete mitochondrial genome sequences of two Indonesian rasboras (Rasbora aprotaenia and Rasbora lateristriata). Mitochondrial DNA A. 27(6):4222–4223.
  • Liao TY, Ünlü E, Kullander SO. 2011. Western boundary of the subfamily Danioninae in Asia (Teleostei, Cyprinidae): derived from the systematic position of Barilius mesopotamicus based on molecular and morphological data. Zootaxa. 2880(1):31–40.
  • Luo F, Huang J, Luo T, Yang J, Zhou H, Wen Y. 2019. Complete mitochondrial genome and phylogenetic analysis of Yunnanilus pulcherrimus (Cypriniformes, Nemacheilidae). Mitochondrial DNA B. 4(1):1269–1270.
  • Miya M, Minamoto T, Yamanaka H, Oka S-I, Sato K, Yamamoto S, Sado T, Doi H. 2016. Use of a filter cartridge for filtration of water samples and extraction of environmental DNA. Jove-J Vis Exp. (117), e54741. doi:10.3791/54741.
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York (NY): Oxford University Press.
  • Nurk S, Meleshko D, Korobeynikov A, Pevzner PA. 2017. MetaSPAdes: a new versatile metagenomic assembler. Genome Res. 27(5):824–834.
  • Prabhu VR, Singha HS, Kumar RG, Gopalakrishnan A, Nagarajan M. 2020. Characterization of the complete mitochondrial genome of Barilius malabaricus and its phylogenetic implications. Genomics. 112(3):2154–2163.
  • Qin T, Maung KW, Chen XY. 2019. Opsarius putaoensis, a new species of subfamily Danioninae (Actinopterygii, Cyprinidae) from the Irrawaddy River basin in northern Myanmar. Zootaxa. 4615(3):zootaxa.4615.3.11–593.
  • Saitoh K, Sado T, Doosey MH, Bart HL, Jr Inoue JG, Nishida M, Mayden RL, Miya M. 2011. Evidence from mitochondrial genomics supports the lower Mesozoic of South Asia as the time and place of basal divergence of cypriniform fishes (Actinopterygii: ostariophysi). Zool J Linn Soc. 161(3):633–662.
  • Tan HY, Yang YY, Zhang M, Chen XL. 2020. The complete mitochondrial genome of Rhinogobius duospilus (Gobiidae: gobionellinae). Mitochondrial DNA B. 5(3):3406–3407.
  • Tang KL, Agnew MK, Hirt MV, Sado T, Schneider LM, Freyhof J, Sulaiman Z, Swartz E, Vidthayanon C, Miya M, et al. 2010. Systematics of the subfamily danioninae (Teleostei: cypriniformes: Cyprinidae). Mol Phylogenet Evol. 57(1):189–214.
  • Wang D, Dai CX, Li Q, Li Y, Liu ZZ. 2019. Complete mitochondrial genome and phylogenic analysis of Rhinogobius cliffordpopei (Perciformes, Gobiidae). Mitochondrial DNA B. 4(2):2473–2474.
  • Yang CJ, Chen Y, Chen Z, He GH, Zhong ZL, Xue WB. 2020. The next-generation sequencing reveals the complete mitochondrial genome of Rhinogobius formosanus (Perciformes: Gobiidae). Mitochondrial DNA B. 5(3):2673–2674.
  • Yu P, Zhou L, Yang XL, Li LL, Jin H, Li Z, Wang ZW, Li XY, Zhang XJ, Wang Y, et al. 2022. Comparative mitogenomic analyses unveil conserved and variable mitogenomic features and phylogeny of Chedrinae fish. Zool Res. 43(1):30–32.