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Mitogenome Announcement

Mitochondrial genome of a typical cavefish of Sinocyclocheilus anatirostris

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Pages 593-597 | Received 15 Dec 2022, Accepted 24 Apr 2023, Published online: 20 May 2023

References

  • Allen GC, Flores-Vergara MA, Krasynanski S, Kumar S, Thompson WF. 2006. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat Protoc. 1(5):2320–2325.
  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 19(5):455–477.
  • Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF. 2013. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 69(2):313–319.
  • Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, et al. 2014. BEAST 2: a software platform for Bayesian evolutionary analysis. PLOS Comput Biol. 10(4):e1003537.
  • Chen Y, Chen Y, Shi C, Huang Z, Zhang Y, Li S, Li Y, Ye J, Yu C, Li Z, et al. 2018. SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data. Gigascience. 7(1):1–6.
  • Fang PW. 1936. Sinocyclocheilus tingi, a new genus and species of Chinese barbid fishes from Yunnan. Sinensia. 7:588–593.
  • IUCN. 2022. The red list of threatened species. Version 2022-1. [accessed 2022 Aug 26]. http://www.iucnredlist.org.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780.
  • Lan JH, Gan X, Wu TJ, Yang J. 2013. Cave fishes of Guangxi, China. Beijing: Science Press.
  • Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 29(6):1695–1701.
  • Lin RD, Luo ZF. 1986. A new blind barbid fish (Pisces, Cyprinidae) from subterranean water in Guangxi, China. Acta Hydrobio Sin. 10(4):380–382.
  • Liu T, Deng HQ, Ma L, Xiao N, Zhou J. 2018. Sinocyclocheilus zhenfengensis, a new cyprinid species (Pisces: Teleostei) from Guizhou Province, Southwest China. J Appl Ichthyol. 34(4):945–953.
  • Luo Q, Zhang RY. 2021. The complete mitochondrial genome and phylogenetic analysis of Sinocyclocheilus angularis (Cypriniformes: Cyprinidae). Mitochondrial DNA B Resour. 6(12):3438–3439.
  • Ma L, Zhao YH, Yang JX. 2019. Cavefish of China. In: Encyclopedia of caves. Cambridge: Academic Press.
  • Wen HM, Luo T, Wang YL, Wang SW, Liu T, Xiao N, Zhou J. 2022. Molecular phylogeny and historical biogeography of the cave fish genus Sinocyclocheilus (Cypriniformes: Cyprinidae) in southwest China. Integr Zool. 17(2):311–325.
  • Xu C, Luo T, Zhou JJ, Wu L, Zhao XR, Yang HF, Xiao N, Zhou J. 2023. Sinocyclocheilus longicornus (Cypriniformes, Cyprinidae), a new species of microphthalmic hypogean fish from Guizhou, Southwest China. ZK. 1141:1–28.
  • Yuan DX, Li B, Liu Z. 1995. Karst in China. ERA J. 18(1–2):62–65.
  • Zhang D, Gao F, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT. 2020. PhyloSuite: an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol Ecol Resour. 20(1):348–355.
  • Zhao YH, Zhang CG. 2009. Endemic fishes of Sinocyclocheilus (Cypriniformes: Cyprinidae) in China—species diversity, cave adaptation, systematics and zoogeography. Beijing: Science Press.