References
- Alexandros S. 2014. Raxml version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 9:1312–1313.
- Banfi E. 2014. Chrysojasminum, a new genus for Jasminum sect. Alternifolia (Oleaceae, Jasmineae). Nat Hist Sci. 1(1):3–6. doi: 10.4081/nhs.2014.54.
- Bolger AM, Marc L, Bjoern U. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi: 10.1093/bioinformatics/btu170.
- Chang MC, Qiu LQ, Green PS. 1996. Oleaceae. Flora China. 15:272–319.
- Hu Y, Zhang Q, Rao G, Sodmergen . 2008. Occurrence of plastids in the sperm cells of Caprifoliaceae: biparental plastid inheritance in angiosperms is unilaterally derived from maternal inheritance. Plant Cell Physiol. 49(6):958–968. doi: 10.1093/pcp/pcn069.
- Jin JJ, Yu WB, Yang JB, Song Y, dePamphilis CW, Yi TS, Li DZ. 2020. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. Genome Biol. 21(1):241. doi: 10.1186/s13059-020-02154-5.
- Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. doi: 10.1093/molbev/mst010.
- Kim DK, Kim JH. 2011. Molecular phylogeny of tribe Forsythieae (Oleaceae) based on nuclear ribosomal DNA internal transcribed spacers and plastid DNA trnL-F and matK gene sequences. J Plant Res. 124(3):339–347. doi: 10.1007/s10265-010-0383-9.
- Lee HL, Jansen RK, Chumley TW, Kim KJ. 2007. Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions. Mol Biol Evol. 24(5):1161–1180. doi: 10.1093/molbev/msm036.
- Liu S, Ni Y, Li J, Zhang X, Yang H, Chen H, Liu C. 2023. CPGView: a package for visualizing detailed chloroplast genome structures. Mol Ecol Resour. 23(3):694–704. doi: 10.1111/1755-0998.13729.
- Mehmood F, Abdullah , Shahzadi I, Ahmed I, Waheed MT, Mirza B. 2020a. Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae. Genomics, 112(2):1522–1530. doi: 10.1016/j.ygeno.2019.08.024.
- Mehmood F, Abdullah , Ubaid Z, Bao Y, Poczai P, Mirza B. 2020b. Comparative plastomics of Ashwagandha (Withania, Solanaceae) and identification of mutational hotspots for barcoding medicinal plants. Plants. 9(6):752. doi: 10.3390/plants9060752.
- Mehmood F, Abdullah , Ubaid Z, Shahzadi I, Ahmed I, Waheed MT, Poczai P, Mirza B. 2020c. Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica). PeerJ. 8:e9552. doi: 10.7717/peerj.9552.
- Qu XJ, Moore MJ, Li DZ, Yi TS. 2019. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes. Plant Methods. 15(1):1–12. doi: 10.1186/s13007-019-0435-7.
- Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. Am J Bot. 94(3):275–288. doi: 10.3732/ajb.94.3.275.