The complete mitochondrial genome of Allogalathea elegans (Adams & White, 1848) (Decapoda: Galatheidae)

References

• Allen GC, Flores-Vergara MA, Krasynanski S, Kumar S, Thompson WF. 2006. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat Protoc. 1(5):2320–2325. doi: 10.1038/nprot.2006.384.
   PubMed Web of Science ®Google Scholar
• Baba K, Macpherson E, Lin CW, Chan TY. 2009. Crustacean Fauna of Taiwán. Squat lobsters (Chirostylidae and Galatheidae). National Taiwan Ocean University. http://scholars.ntou.edu.tw/handle/123456789/16148.
   Google Scholar
• Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30(15):2114–2120. doi: 10.1093/bioinformatics/btu170.
   Google Scholar
• Cabezas P, Macpherson E, Machordom A. 2011. Allogalathea (Decapoda: Galatheidae): a monospecific genus of squat lobster? Zoolog J Linnean Soc. 162(2):245–270. doi: 10.1111/j.1096-3642.2010.00681.x.
   Web of Science ®Google Scholar
• Demes KW, Graham MH, Suskiewicz TS. 2009. Phenotypic plasticity reconciles incongruous molecular and morphological taxonomies: the Giant Kelp, Macrocystis (laminariales, Phaeophyceae), is a monospecific genus. J Phycol. 45(6):1266–1269. doi: 10.1111/j.1529-8817.2009.00752.x.
   PubMed Web of Science ®Google Scholar
• Hwang JY, Haque N, Lee DH, Kim BM, Rhee JS. 2019. Complete mitochondrial genome of the intertidal hermit crab, Pagurus similis (Crustacea, Anomura). Mitochondrial DNA Part B. 4(1):1861–1862. doi: 10.1080/23802359.2019.1613183.
   Web of Science ®Google Scholar
• Jin X, Guo X, Chen J, Li J, Zhang S, Zheng S, Wang Y, Peng Y, Zhang K, Liu Y, et al. 2023. The complete mitochondrial genome of Hemigrapsus sinensis (Brachyura, Grapsoidea, Varunidae) and its phylogenetic position within Grapsoidea. Genes Genomics. 45(3):377–391. doi: 10.1007/s13258-022-01319-9.
   PubMed Web of Science ®Google Scholar
• Kim NK, Alam J, Kim GR, Andriyono S, Park H, Kim HW. 2018. The complete mitochondrial genome of the Argentine red shrimp Pleoticus muelleri (Bate, 1888) (Crustacea, Decapoda, Solenoceridae). Mitochondrial DNA Part B. 3(2):1027–1028. doi: 10.1080/23802359.2018.1511845.
   PubMed Web of Science ®Google Scholar
• Lee CW, Song JH, Min GS, Kim S. 2016. The complete mitochondrial genome of squat lobster, Munida gregaria (Anomura, Galatheoidea, Munididae). Mitochondrial DNA Part B. 1(1):204–206. doi: 10.1080/23802359.2016.1155087.
   PubMed Web of Science ®Google Scholar
• Lee S, Lee S k, Kim S, Kim W. 2019. First records of two squat lobsters (Decapoda, Galatheidae) from Korea. Crustac. 92(6):725–737. doi: 10.1163/15685403-00003900.
   Web of Science ®Google Scholar
• Li Q, Xu C, Wang C, Liu G. 2019. The complete mitochondrial genome of red-clawed crab Chiromantes haematochir (Sesarmidae: Grapsidae). Mitochondrial DNA Part B. 4(1):53–54. doi: 10.1080/23802359.2018.1536452.
   PubMed Web of Science ®Google Scholar
• Liu Y, Cui Z. 2010. Complete mitochondrial genome of the Asian paddle crab Charybdis japonica (Crustacea: Decapoda: Portunidae): gene rearrangement of the marine brachyurans and phylogenetic considerations of the decapods. Mol Biol Rep. 37(5):2559–2569. doi: 10.1007/s11033-009-9773-2.
   PubMed Web of Science ®Google Scholar
• Minh BQ, Schmidt HA, Chernomor O, Schrempf D, Woodhams MD, von HA, Lanfear R. 2020. IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Mol Biol Evolut. 37(5):1530–1534. doi: 10.1093/molbev/msaa015.
   PubMed Web of Science ®Google Scholar
• Ni Y, Li J, Zhang C, Liu C. 2023. Generating sequencing depth and coverage map for organelle genomes. ZappyLab, Inc. https://protocols.cloud/view/generating-sequencing-depth-and-coverage-map-for-o-cswxwffn.
   Google Scholar
• Shen H, Braband A, Scholtz G. 2013. Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships. Mol Phylogenet Evol. 66(3):776–789. doi: 10.1016/j.ympev.2012.11.002.
   PubMed Web of Science ®Google Scholar
• Shi G, Cui Z, Hui M, Liu Y, Chan TY, Song C. 2016. Unusual sequence features and gene rearrangements of primitive crabs revealed by three complete mitochondrial genomes of Dromiacea. Comp Biochem Physiol D. 20:65–73. doi: 10.1016/j.cbd.2016.07.004.
   Google Scholar
• Tan MH, Gan HM, Dally G, Horner S, Moreno PAR, Rahman S, Austin CM. 2018. More limbs on the tree: Mitogenome characterisation and systematic position of “living fossil” species Neoglyphea inopinata and Laurentaeglyphea neocaledonica (Decapoda). Invert System. 32(2):448–456. doi: 10.1071/IS17050.
   Web of Science ®Google Scholar
• Tan MH, Gan HM, Lee YP, Linton S, Grandjean F, Bartholomei-Santos ML, Miller AD, Austin CM. 2018. ORDER within the chaos: insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements. Mol Phylogenet Evol. 127:320–331. doi: 10.1016/j.ympev.2018.05.015.
   PubMed Web of Science ®Google Scholar
• Xing Y, Ma X, Wei Y, Pan D, Liu W, Sun H. 2016. The complete mitochondrial genome of the semiterrestrial crab, Chiromantes neglectum (Eubrachyura: Grapsoidea: Sesarmidae). Mitochondrial DNA Part B. 1(1):461–463. doi: 10.1080/23802359.2016.1186509.
   PubMed Web of Science ®Google Scholar
• Yang JS, Yang WJ. 2008. The complete mitochondrial genome sequence of the hydrothermal vent galatheid crab Shinkaia crosnieri (Crustacea: Decapoda: Anomura): a novel arrangement and incomplete tRNA suite. BMC Genomics. 9(1):257. doi: 10.1186/1471-2164-9-257.
   PubMed Web of Science ®Google Scholar
• Yundaeng C, Naktang C, U-Thoomporn S, Narong N, Phetchawang P, Pootakham W, Promdam R, Tangphatsornruang S. 2022. The complete mitochondrial genome sequence of the karst-dwelling crab, Terrapotamon thungwa (Crustacea: Brachyura: Potamidae). Mitochondrial DNA Part B. 7(5):769–771. doi: 10.1080/23802359.2022.2070038.
   PubMed Web of Science ®Google Scholar
• Zhang D, Zhou Y, Cheng H, Wang C. 2017. The complete mitochondrial genome of a yeti crab Kiwa tyleri Thatje, 2015 (Crustacea: Decapod: Anomura: Kiwaidae) from deep-sea hydrothermal vent. Mitochondrial DNA Part B. 2(1):141–142. doi: 10.1080/23802359.2017.1289347.
   PubMed Web of Science ®Google Scholar
• Zhang Y, Gong L, Lu X, Jiang L, Liu B, Liu L, Lü Z, Li P, Zhang X. 2020. Gene rearrangements in the mitochondrial genome of Chiromantes eulimene (Brachyura: Sesarmidae) and phylogenetic implications for Brachyura. Int J Biol Macromol. 162:704–714. doi: 10.1016/j.ijbiomac.2020.06.196.
   PubMed Web of Science ®Google Scholar
• Zhang Z, Schwartz S, Wagner L, Miller W. 2000. A greedy algorithm for aligning DNA sequences. J Comput Biol. 7(1–2):203–214. doi: 10.1089/10665270050081478.
   PubMed Web of Science ®Google Scholar
• Zhu P, Luo P, Wang P, Xu Y, Zhang H, Wu H, Liao Y, Liang F, Liu L. 2019. The complete mitochondrial genome of Trachypenaeus curvirostris (Stimpson, 1860). Mitochondrial DNA B Resour. 4(2):2834–2835. doi: 10.1080/23802359.2019.1660279.
   PubMed Web of Science ®Google Scholar